EU

Meet the Team

Beatriz Paniagua, Ph.D.

Assistant Director of Medical Computing

Medical Computing

Kitware North Carolina
Carrboro, NC

Ph.D. in Computer Science
Heriot-Watt University and University of Extremadura

M.S. in Computer Science
University of Extremadura

B.S. in Computer Science
University of Extremadura

Bea Paniagua

Beatriz (“Bea”) Paniagua is an Assistant Director of Kitware’s Medical Computing Team, based in Carrboro, North Carolina. She leads large-scale research and development programs at the intersection of artificial intelligence, healthcare, and scientific computing, guiding teams that design, build, and deliver software solutions used by researchers, clinicians, and industry partners worldwide.

Bea manages several commercial contracts as a program manager, overseeing the full life cycle from proposal development through closure. She directs cross-functional teams of engineers, clinicians, partners, and researchers to deliver complex biomedical software systems. She coordinates multi-year projects supported by public and private funding, ensuring on-time delivery, compliance with technical requirements, and stakeholder alignment. In day-to-day operations, she plans budgets, allocates resources, mitigates risks, and produces reports. She also supports the development of regulatory pathways for products resulting from these programs when appropriate.

At Kitware, Bea serves as Principal Investigator (PI) for several NIH-funded initiatives, including Slicer Shape Analysis Toolbox (SlicerSALT), Osteotomy Trainer, and Anesthesia Injection Simulator, developed in collaboration with academic and research partners. These initiatives have contributed to thriving developer ecosystems around Kitware’s open-source platforms, accelerating their adoption across the research community. She has also led subcontracts on other NIH-supported programs such as SlicerHeart, SlicerAutoscoper, and SlicerCMF, which extend the imaging analysis capabilities of 3DSlicer for cardiovascular, arthrokinematics, and craniofacial applications.

Bea’s leadership extends beyond projects. She contributes to Kitware’s strategic planning and business development, aligning proposal opportunities with company objectives and supporting recruiting efforts. She has served on the Board of Directors, the Onboarding Committee, and the Employee Ownership Committee, each focused on advancing Kitware’s culture and long-term success. In the broader community, she has organized conferences and workshops such as Medical Image Computing and Computer Assisted Intervention (MICCAI),  International Symposium on Biomedical Imaging (ISBI), International Association for Dental, Oral, and Craniofacial Research (IADR), and American Society of Biomechanics (ASB). She has served as a reviewer for leading journals and NIH panels, and she has volunteered her time to initiatives supporting women and underserved populations in Computer Science.

Prior to joining Kitware, Bea was an Assistant Professor at the University of North Carolina at Chapel Hill with joint appointments in Computer Science, Psychiatry, and Orthodontics. She has held research positions in Europe, Japan, and the United States, including a year long research internship at Siemens Corporate Research.

Bea earned her Ph.D. in Computer Science through the European Ph.D. program from Heriot-Watt University in the United Kingdom and the University of Extremadura in Spain.

Awards

Invited Talks & Media

  • Advancing Imaging, Device Production, and Clinical Capabilities in Digital Dentistry, Invited talk, VisualizeMED: Modeling and Simulation in Medicine Conference, 2021

  • Shape Analysis Modeling Workshop, International Association for Dental Research (IADR), 2020

  • SlicerSALT Workshop, Presenter, International Symposium on Computer Methods in Biomechanics and Biomedical Engineering (CMBBE), 2019

  • Image Analysis via Web-Based Open Science, Invited talk, From Cells to Galaxies Conference, 2019

Professional Associations & Service

  • Member, Special Interest group in Shape Analysis and Modeling, 2018-present

  • Consultant, Chapel Hill High School Academy of Information Technology (AOIT), 2017-present

Publications

  1. S. Amin, H. Dewey, A. Lasso, P. Sabin, Y. Han, J. Vicory, B. Paniagua, C. Herz, H. Nam, A. Cianciulli, M. Flynn, D. Laurence, D. Harrild, G. Fichtinger, M. Cohen, and M. Jolley, "Euclidean and Shape-Based Analysis of the Dynamic Mitral Annulus in Children using a Novel Open-Source Framework," Journal of the American Society of Echocardiography, vol. 37, no. 2, pp. 259-267, Feb. 2024. [URL]
  2. M. Gillot, F. Miranda, B. Baquero, A. Ruellas, M. Gurgel, N. Al Turkestani, L. Anchling, N. Hutin, E. Biggs, M. Yatabe, B. Paniagua, J. Fillion‐Robin, D. Allemang, J. Bianchi, L. Cevidanes, and J. Prieto, "Automatic landmark identification in cone‐beam computed tomography," Orthodontics & Craniofacial Research, vol. 26, no. 4, pp. 560-567, Nov. 2023. [URL]
  3. H. Nam, M. Flynn, A. Lasso, C. Herz, P. Sabin, Y. Wang, A. Cianciulli, C. Vigil, J. Huang, J. Vicory, B. Paniagua, D. Allemang, D. Goldberg, M. Nuri, M. Cohen, G. Fichtinger, and M. Jolley, "Modeling of the Tricuspid Valve and Right Ventricle in Hypoplastic Left Heart Syndrome With a Fontan Circulation," Circulation: Cardiovascular Imaging, vol. 16, no. 3, Mar. 2023. [URL]
  4. P. Sahu, J. Fishbaugh, J. Vicory, A. Khan, and B. Paniagua, "3D Fourier Domain Adaptation for Improving CBCT Tooth Segmentation Under Scanner Parameter Shift," in IEEE 20th International Symposium on Biomedical Imaging, 2023. [URL]
  5. M. Leclercq, A. Ruellas, M. Gurgel, M. Yatabe, J. Bianchi, L. Cevidanes, M. Styner, B. Paniagua, and J. Prieto, "Dentalmodelseg: Fully Automated Segmentation of Upper and Lower 3D Intra-Oral Surfaces," in IEEE 20th International Symposium on Biomedical Imaging, 2023. [URL]
  6. N. Khargonkar, B. Paniagua, and J. Vicory, "Skeletal Point Representations with Geometric Deep Learning," in IEEE 20th International Symposium on Biomedical Imaging, 2023. [URL]
  7. J. Vicory, C. Herz, M. Flynn, A. Cianciulli, P. Sabin, A. Lasso, M. Jolley, and B. Paniagua, "Skeletal modeling of the tricuspid valve via cylindrical parameterization," in Medical Imaging: Image Processing, 2023. [URL]
  8. J. Li et al., "MedShapeNet -- A Large-Scale Dataset of 3D Medical Shapes for Computer Vision," Computer Vision and Pattern Recognition, 2023. [URL]
  9. Y. Han, J. Vicory, G. Gerig, P. Sabin, H. Dewey, S. Amin, A. Sulentic, C. Hertz, M. Jolley, B. Paniagua, and J. Fishbaugh, "Hierarchical Geodesic Polynomial Model for Multilevel Analysis of Longitudinal Shape," in Information Processing in Medical Imaging. Springer Nature Switzerland, 2023, pp. 810-821. [URL]
  10. Y. Han, J. Fishbaugh, C. Gonzalez, D. Aboyotes, J. Vicory, S. Tang, and B. Paniagua, "Geodesic Logistic Analysis of Lumbar Spine Intervertebral Disc Shapes in Supine and Standing Positions," in Shape in Medical Imaging. Springer Nature Switzerland, 2023, pp. 188-200. [URL]
  11. J. Fishbaugh, R. Zambrano, J. Schuman, G. Wollstein, J. Vicory, and B. Paniagua, "Modeling Longitudinal Optical Coherence Tomography Images for Monitoring and Analysis of Glaucoma Progression," in Shape in Medical Imaging. Springer Nature Switzerland, 2023, pp. 236-247. [URL]
  12. J. Vicory, Y. Han, J. Prieto, D. Allemang, M. Leclercq, C. Bowley, H. Scheirich, J. Fillion-Robin, S. Pizer, J. Fishbaugh, G. Gerig, M. Styner, and B. Paniagua, "SlicerSALT: From Medical Images to Quantitative Insights of Anatomy," in Shape in Medical Imaging. Springer Nature Switzerland, 2023, pp. 201-210. [URL]
  13. M. Gillot, B. Baquero, C. Le, R. Deleat-Besson, J. Bianchi, A. Ruellas, M. Gurgel, M. Yatabe, N. Al Turkestani, K. Najarian, R. Soroushmehr, S. Pieper, R. Kikinis, B. Paniagua, J. Gryak, M. Ioshida, C. Massaro, L. Gomes, H. Oh, K. Evangelista, C. Chaves Junior, D. Garib, F. Costa, E. Benavides, F. Soki, J. Fillion-Robin, H. Joshi, L. Cevidanes, and J. Prieto, "Automatic multi-anatomical skull structure segmentation of cone-beam computed tomography scans using 3D UNETR," PLOS ONE, vol. 17, no. 10, pp. e0275033, Oct. 2022. [URL]
  14. T. Birdsong, B. Paniagua, J. Cole, J. Cox, S. Marron, D. Zukić, J. Vicory, and M. McCormick, "Femur Atlas Generation and Shape Analysis with Deformable Surface Registration," in 23rd International Workshop on Quantitative Musculoskeletal Imaging, 2022.
  15. P. Sahu, S. Gerber, Q. Zhao, T. Nguyen, M. McCormick, B. Paniagua, and J. Vicory, "Thin shell demons for dental scan registration," in Medical Imaging: Image Processing, 2022. [URL]
  16. A. Wilson, H. Scheirich, B. Paniagua, R. White, T. Nyugen, and V. Arikatla, "A level set approach to high fidelity interactive bone shaving for virtual training of surgical osteotomies," in Medical Imaging: Image-Guided Procedures, Robotic Interventions, and Modeling, 2022. [URL]
  17. J. Vicory, C. Herz, D. Allemang, H. Nam, A. Cianciulli, C. Vigil, Y. Han, A. Lasso, M. Jolley, and B. Paniagua, "Statistical Shape Analysis of the Tricuspid Valve in Hypoplastic Left Heart Syndrome," in Statistical Atlases and Computational Models of the Heart. Multi-Disease, Multi-View, and Multi-Center Right Ventricular Segmentation in Cardiac MRI Challenge. Springer International Publishing, 2022, pp. 132-140. [URL]
  18. P. Sahu, J. Vicory, M. McCormick, A. Khan, H. Geha, and B. Paniagua, "Wavelet Guided 3D Deep Model to Improve Dental Microfracture Detection," in Applications of Medical Artificial Intelligence, 2022. [URL]
  19. R. Deleat-Besson, C. Le, N. Al Turkestani, W. Zhang, M. Dumont, S. Brosset, J. Carlos Prieto, L. Cevidanes, J. Bianchi, A. Ruellas, M. Gurgel, C. Massaro, A. Aliaga-Del Castillo, M. Ioshida, M. Yatabe, E. Benavides, H. Rios, F. Soki, G. Neiva, J. Fernando Aristizabal, D. Rey, M. Antonia Alvarez, K. Najarian, J. Gryak, M. Styner, J. Fillion-Robin, B. Paniagua, and R. Soroushmehr, "Automatic Segmentation of Dental Root Canal and Merging with Crown Shape," in 43rd Annual International Conference of the IEEE Engineering in Medicine & Biology Society, 2021. [URL]
  20. J. Bianchi, A. Ruellas, J. Prieto, T. Li, R. Soroushmehr, K. Najarian, J. Gryak, R. Deleat-Besson, C. Le, M. Yatabe, M. Gurgel, N. Turkestani, B. Paniagua, and L. Cevidanes, "Decision Support Systems in Temporomandibular Joint Osteoarthritis: A review of Data Science and Artificial Intelligence Applications," Seminars in Orthodontics, vol. 27, no. 2, pp. 78-86, Jun. 2021. [URL]
  21. J. Vicory, D. Allemang, D. Zukic, J. Prothero, M. McCormick, and B. Paniagua, "An open-source solution for shape modeling of objects of challenging topologies," in Medical Imaging: Biomedical Applications in Molecular, Structural, and Functional Imaging, 2021. [URL]
  22. N. Al Turkestani, J. Bianchi, R. Deleat‐Besson, C. Le, L. Tengfei, J. Prieto, M. Gurgel, A. Ruellas, C. Massaro, A. Aliaga Del Castillo, K. Evangelista, M. Yatabe, E. Benavides, F. Soki, W. Zhang, K. Najarian, J. Gryak, M. Styner, J. Fillion‐Robin, B. Paniagua, R. Soroushmehr, and L. Cevidanes, "Clinical decision support systems in orthodontics: A narrative review of data science approaches," Orthodontics & Craniofacial Research, vol. 24, no. S2, pp. 26-36, Dec. 2021. [URL]
  23. J. Bianchi, B. Paniagua, A. De Oliveira Ruellas, J. Fillion-Robin, J. Prietro, J. Gonçalves, J. Hoctor, M. Yatabe, M. Styner, T. Li, M. Gurgel, C. Chaves Junior, C. Massaro, D. Garib, L. Vilanova, J. Henriques, A. Castillo, G. Janson, L. Iwasaki, J. Nickel, K. Evangelista, and L. Cevidanes, "3D Slicer Craniomaxillofacial Modules Support Patient-Specific Decision-Making for Personalized Healthcare in Dental Research," in Multimodal Learning for Clinical Decision Support and Clinical Image-Based Procedures. Springer International Publishing, 2020, pp. 44-53. [URL]
  24. S. Pizer, J. Hong, J. Vicory, Z. Liu, J. Marron, H. Choi, J. Damon, S. Jung, B. Paniagua, J. Schulz, A. Sharma, L. Tu, and J. Wang, "Object shape representation via skeletal models (s-reps) and statistical analysis," in Riemannian Geometric Statistics in Medical Image Analysis. Elsevier, 2020, pp. 233-271. [URL]
  25. M. Dumont, J. Prieto, S. Brosset, L. Cevidanes, J. Bianchi, A. Ruellas, M. Gurgel, C. Massaro, A. Del Castillo, M. Ioshida, M. Yatabe, E. Benavides, H. Rios, F. Soki, G. Neiva, J. Aristizabal, D. Rey, M. Alvarez, K. Najarian, J. Gryak, M. Styner, J. Fillion-Robin, B. Paniagua, and R. Soroushmehr, "Patient Specific Classification of Dental Root Canal and Crown Shape," in Shape in Medical Imaging. Springer International Publishing, 2020, pp. 145-153. [URL]
  26. J. Bianchi, J. Gonçalves, A. Ruellas, J. Vimort, M. Yatabe, B. Paniagua, P. Hernandez, E. Benavides, F. Soki, and L. Cevidanes, "Software comparison to analyze bone radiomics from high resolution CBCT scans of mandibular condyles," Dentomaxillofacial Radiology, vol. 48, no. 6, pp. 20190049, Sep. 2019. [URL]
  27. B. Shoukri, J. Prieto, A. Ruellas, M. Yatabe, J. Sugai, M. Styner, H. Zhu, C. Huang, B. Paniagua, S. Aronovich, L. Ashman, E. Benavides, P. de Dumast, N. Ribera, C. Mirabel, L. Michoud, Z. Allohaibi, M. Ioshida, L. Bittencourt, L. Fattori, L. Gomes, and L. Cevidanes, "Minimally Invasive Approach for Diagnosing TMJ Osteoarthritis," Journal of Dental Research, vol. 98, no. 10, pp. 1103-1111, Sep. 2019. [URL]
  28. M. Yatabe, J. Prieto, M. Styner, H. Zhu, A. Ruellas, B. Paniagua, F. Budin, E. Benavides, B. Shoukri, L. Michoud, N. Ribera, and L. Cevidanes, "3D superimposition of craniofacial imaging—The utility of multicentre collaborations," Orthodontics & Craniofacial Research, vol. 22, no. S1, pp. 213-220, May 2019. [URL]
  29. M. Ioshida, J. Prieto, C. Huang, A. Ruellas, M. Yatabe, M. Styner, L. Cevidanes, L. Michoud, B. Paniagua, J. Bianchi, and J. Gonçalves, "A web-based system for statistical shape analysis in temporomandibular joint osteoarthritis," in Medical Imaging: Biomedical Applications in Molecular, Structural, and Functional Imaging, 2019. [URL]
  30. B. Paniagua, J. Prothero, J. Vimort, A. Ruellas, J. Marron, L. Cevidanes, E. Benavides, M. McCormick, and P. Hernandez-Cerdan, "Advanced statistical analysis to classify high dimensionality textural probability-distribution matrices," in Medical Imaging: Biomedical Applications in Molecular, Structural, and Functional Imaging, 2019. [URL]
  31. J. Zupnik, M. Ioshida, M. Yatabe, A. Ruellas, L. Gomes, S. Aronovich, E. Benavides, S. Edwards, B. Paniagua, and L. Cevidanes, "Three-dimensional analysis of condylar changes in surgical correction for open bite patients with skeletal class II and class III malocclusions," International Journal of Oral and Maxillofacial Surgery, vol. 48, no. 6, pp. 739-745, Jun. 2019. [URL]
  32. M. Yatabe, L. Gomes, A. Ruellas, J. Lopinto, L. Macron, B. Paniagua, F. Budin, J. Prieto, M. Ioshida, and L. Cevidanes, "Challenges in measuring angles between craniofacial structures," Journal of Applied Oral Science, vol. 27, pp. e20180380, 2019. [URL]
  33. J. Prothero, J. Vimort, A. Ruellas, J. Marron, H. Shah, L. Cevidanes, E. Benavides, and B. Paniagua, "Advanced statistical analysis to classify high dimensionality textural probability-distribution matrices," in submitted to Society of Photographic Instrumentation Engineers in Medical Imaging Conference, 2019.
  34. P. Hernandez-Cerdan, B. Paniagua, J. Prothero, J. Marron, E. Livingston, T. Bateman, and M. McCormick, "Methods for quantitative characterization of bone injury from computed-tomography images," in submitted to Society of Photographic Instrumentation Engineers in Medical Imaging Conference, 2019.
  35. A. AlHadidi, B. Paniagua, R. Cook, D. Tyndall, Z. Baqain, and L. Cevidanes, "The use of a custom-made virtual template for corrective surgeries of asymmetric patients: proof of principle and a multi-center end-user survey," International Journal of Computer Assisted Radiology and Surgery, Sep. 2018. [URL]
  36. B. Paniagua, H. Shah, P. Hernandez-Cerdan, F. Budin, D. Chittajallu, R. Walter, A. Mol, A. Khan, and J. Vimort, "Automatic quantification framework to detect cracks in teeth," in Medical Imaging: Biomedical Applications in Molecular, Structural, and Functional Imaging, 2018. [URL]
  37. J. Prothero, M. McCormick, B. Paniagua, J. Vimort, A. Ruellas, J. Marron, L. Cevidanes, and E. Benavides, "Detection of bone loss via subchondral bone analysis," in Medical Imaging: Biomedical Applications in Molecular, Structural, and Functional Imaging, 2018. [URL]
  38. J. Prieto, P. de Dumast, C. Mirabel, B. Paniagua, L. Cevidanes, N. Tubau, M. Styner, A. Ruellas, and M. Yatabe, "SVA: shape variation analyzer," in Medical Imaging: Biomedical Applications in Molecular, Structural, and Functional Imaging, 2018. [URL]
  39. I. Lyu, J. Perdomo, G. Yapuncich, B. Paniagua, D. Boyer, and M. Styner, "Group-wise shape correspondence of variable and complex objects," in Medical Imaging: Image Processing, 2018. [URL]
  40. V. Arikatla, M. Tyagi, A. Enquobahrie, T. Nguyen, G. Blakey, R. White, and B. Paniagua, "High fidelity virtual reality orthognathic surgery simulator," in SPIE Medical Imaging, 2018. [URL]
  41. S. Horvath, B. Paniagua, J. Andruejol, A. Porras, M. Linguraru, and A. Enquobahrie, "Osteotomy planner: an open-source tool for osteotomy simulation," in SPIE Medical Imaging, 2018. [URL]
  42. P. de Dumast, C. Mirabel, L. Cevidanes, A. Ruellas, M. Yatabe, M. Ioshida, N. Ribera, L. Michoud, L. Gomes, C. Huang, H. Zhu, L. Muniz, B. Shoukri, B. Paniagua, M. Styner, S. Pieper, F. Budin, J. Vimort, L. Pascal, and J. Prieto, "A web-based system for neural network based classification in temporomandibular joint osteoarthritis," Computerized Medical Imaging and Graphics, vol. 67, pp. 45-54, Jul. 2018. [URL]
  43. A. Porras, B. Paniagua, S. Ensel, R. Keating, G. Rogers, A. Enquobahrie, and M. Linguraru, "Locally Affine Diffeomorphic Surface Registration and Its Application to Surgical Planning of Fronto-Orbital Advancement," IEEE Transactions on Medical Imaging, vol. 37, no. 7, pp. 1690-1700, Jul. 2018. [URL]
  44. L. Tu, M. Styner, J. Vicory, S. Elhabian, R. Wang, J. Hong, B. Paniagua, J. Prieto, D. Yang, R. Whitaker, and S. Pizer, "Skeletal Shape Correspondence Through Entropy," IEEE Transactions on Medical Imaging, vol. 37, no. 1, pp. 1-11, Jan. 2018. [URL]
  45. A. Oh, M. Mastromanolis, B. Paniagua, A. Enquobahrie, M. Linguraru, L. Tu, A. Porras, N. Lepore, D. Tsering, R. Keating, and G. Rogers, "Radiation-free quantification of head malformations in craniosynostosis patients from 3D photography," in Computer-Aided Diagnosis, 2018. [URL]
  46. L. Gomes, L. Soares Cevidanes, M. Gomes, A. Carlos de Oliveira Ruellas, D. Obelenis Ryan, B. Paniagua, L. Wolford, and J. Gonçalves, "Three-dimensional quantitative assessment of surgical stability and condylar displacement changes after counterclockwise maxillomandibular advancement surgery: Effect of simultaneous articular disc repositioning," American Journal of Orthodontics and Dentofacial Orthopedics, vol. 154, no. 2, pp. 221-233, Aug. 2018. [URL]
  47. J. Fishbaugh, L. Pascal, L. Fischer, T. Nguyen, C. Boen, J. Goncalves, G. Gerig, and B. Paniagua, "Estimating shape correspondence for populations of objects with complex topology," in IEEE 15th International Symposium on Biomedical Imaging, 2018. [URL]
  48. J. Vicory, L. Pascal, P. Hernandez, J. Fishbaugh, J. Prieto, M. Mostapha, C. Huang, H. Shah, J. Hong, Z. Liu, L. Michoud, J. Fillion-Robin, G. Gerig, H. Zhu, S. Pizer, M. Styner, and B. Paniagua, "SlicerSALT: Shape AnaLysis Toolbox," in Shape in Medical Imaging. Springer International Publishing, 2018, pp. 65-72. [URL]
  49. T. Nguyen, B. Paniagua, L. Pascal, J. Fishbaugh, C. Boen, J. Goncalves, L. Fischer, and T. Jackson, "A New Method for Quantifying Craniofacial Shape Changes," in IADR/PER General Session (London, England), 2018. [URL]
  50. C. McDaniel, N. Dunlop, R. White, Jr, G. Blakey, T. Nguyen, and B. Paniagua, "High fidelity virtual reality orthognathic surgery simulator," in Proceedings of the Annual Conference of the American College of Oral and Maxillofacial Surgeons, 2018.
  51. V. Arikatla, T. Nguyen, G. Blakey, R. White, Jr, A. Enquobahrie, and B. Paniagua, "Virtual reality osteotomy trainer for orthognathic surgery," in Submitted to 10th National Image-Guided Therapy Workshop, 2018.
  52. S. Dangi, H. Shah, A. Porras, B. Paniagua, C. Linte, M. Linguraru, and A. Enquobahrie, "Robust head CT image registration pipeline for craniosynostosis skull correction surgery," Healthcare Technology Letters, vol. 4, no. 5, pp. 174-178, Oct. 2017. [URL]
  53. R. Vetreno, R. Yaxley, B. Paniagua, G. Johnson, and F. Crews, "Adult rat cortical thickness changes across age and following adolescent intermittent ethanol treatment," Addiction Biology, vol. 22, no. 3, pp. 712-723, May 2017. [URL]
  54. B. Paniagua, S. Kim, M. Moustapha, M. Styner, H. Cody-Hazlett, R. Gimple-Smith, A. Rumple, J. Piven, J. Gilmore, G. Skolnick, and K. Patel, "Brain structure in sagittal craniosynostosis," in SPIE Medical Imaging, 2017. [URL]
  55. B. Paniagua, L. Pascal, J. Prieto, J. Vimort, L. Gomes, M. Yatabe, A. Ruellas, F. Budin, S. Pieper, M. Styner, E. Benavides, and L. Cevidanes, "Diagnostic index: an open-source tool to classify TMJ OA condyles," in SPIE Medical Imaging, 2017. [URL]
  56. J. Prieto, B. Paniagua, M. Yatabe, A. Ruellas, L. Fattori, L. Muniz, M. Styner, and L. Cevidanes, "Federating heterogeneous datasets to enhance data sharing and experiment reproducibility," in SPIE Medical Imaging, 2017. [URL]
  57. C. Ahlbrecht, A. Ruellas, B. Paniagua, J. Schilling, J. McNamara, and L. Cevidanes, "Three-dimensional characterization of root morphology for maxillary incisors," PLOS ONE, vol. 12, no. 6, pp. e0178728, Jun. 2017. [URL]
  58. F. Ebrahim, A. Ruellas, B. Paniagua, E. Benavides, K. Jepsen, L. Wolford, J. Goncalves, and L. Cevidanes, "Accuracy of biomarkers obtained from cone beam computed tomography in assessing the internal trabecular structure of the mandibular condyle," Oral Surgery, Oral Medicine, Oral Pathology and Oral Radiology, vol. 124, no. 6, pp. 588-599, Dec. 2017. [URL]
  59. M. Judson, A. Burette, C. Thaxton, A. Pribisko, M. Shen, A. Rumple, W. Del Cid, B. Paniagua, M. Styner, R. Weinberg, and B. Philpot, "Decreased Axon Caliber Underlies Loss of Fiber Tract Integrity, Disproportional Reductions in White Matter Volume, and Microcephaly in Angelman Syndrome Model Mice," The Journal of Neuroscience, vol. 37, no. 31, pp. 7347-7361, Aug. 2017. [URL]
  60. L. Tu, A. Porras, S. Ensel, D. Tsering, B. Paniagua, A. Enquobahrie, A. Oh, R. Keating, G. Rogers, and M. Linguraru, "Intracranial Volume Quantification from 3D Photography," in Computer Assisted and Robotic Endoscopy and Clinical Image-Based Procedures. Springer International Publishing, 2017, pp. 116-123. [URL]
  61. J. Vimort, M. McCormick, and B. Paniagua, "Computing Bone Morphometric Feature Maps from 3-Dimensional Images," Insight Journal, no. January-December 2017, 2017. [URL]
  62. J. Vimort, M. McCormick, F. Budin, and B. Paniagua, "Computing Textural Feature Maps for N-Dimensional images," Insight Journal, 2017. [URL]
  63. L. Gomes, L. Cevidanes, M. Gomes, A. Ruellas, D. Ryan, B. Paniagua, L. Wolford, and J. Goncalves, "Correlation Between Condylar Displacement and Remodeling Changes Following Orthognathic Surgery," in IADR/AADR/CADR General Session, 2017. [URL]
  64. N. Pentis, S. Pieper, V. Boen, L. Cevidanes, A. Ruellas, M. Yatabe, L. Macron, J. Lopinto, F. Budin, B. Paniagua, M. Styner, and J. Prieto, "Evaluating Dental and Craniofacial Bionetwork for Image Analysis's Dissemination Efforts," in IADR/AADR/CADR General Session, 2017. [URL]
  65. F. Ebrahim, A. Ruellas, B. Paniagua, E. Benavides, J. Goncalves, L. Wolford, and L. Cevidanes, "CBCT Biomarkers That Can Accurately Assess Mandibular Condyle Trabecular Structure," in IADR/AADR/CADR General Session (San Francisco, California), 2017. [URL]
  66. M. Yatabe, A. Ruellas, L. Gomes, L. Macron, J. Lopinto, B. Paniagua, F. Budin, and L. Cevidanes, "Comparative Study of Three Methods to Compute 3D Craniofacial Angular Measurements," in IADR/AADR/CADR General Session (San Francisco, California), 2017. [URL]
  67. J. Fishbaugh, B. Paniagua, V. Boen, L. Cevidanes, and G. Gerig, "Continuous 4D Shape Analysis of Mandibular Changes," in IADR/AADR/CADR General Session (San Francisco, California), 2017. [URL]
  68. J. Prieto, B. Paniagua, M. Yatabe, A. Ruellas, L. Fattori, L. Muniz, M. Styner, and L. Cevidanes, "Facilitating Experiment Reproducibility Through Data Federation and Image Processing Tools Integration," in IADR/AADR/CADR General Session (San Francisco, California), 2017. [URL]
  69. L. Cevidanes, E. Benavides, B. Paniagua, A. Ruellas, M. Yatabe, L. Gomes, J. Prieto, C. Huang, H. Zhu, M. Styner, and S. Allareddy, "Integrating Clinical and Imaging Markers of Temporomandibular Joint Arthritis," in IADR/AADR/CADR General Session (San Francisco, California), 2017. [URL]
  70. A. Ruellas, F. Copello, M. Yatabe, B. Paniagua, J. Maciel, O. Guariza, and L. Cevidanes, "Unilateral Crossbite Malocclusion: Assessment of Asymmetry," in IADR/AADR/CADR General Session (San Francisco, California), 2017. [URL]
  71. A. Porras, B. Paniagua, A. Enquobahrie, S. Ensel, H. Shah, R. Keating, G. Rogers, and M. Linguraru, "Locally Affine Diffeomorphic Surface Registration for Planning of Metopic Craniosynostosis Surgery," in Medical Image Computing and Computer-Assisted Intervention, 2017. [URL]
  72. S. Birch, M. Lenox, J. Kornegay, B. Paniagua, M. Styner, C. Goodlett, T. Cudd, and S. Washburn, "Maternal choline supplementation in a sheep model of first trimester binge alcohol fails to protect against brain volume reductions in peripubertal lambs," Alcohol, vol. 55, pp. 1-8, Sep. 2016. [URL]
  73. T. Nguyen, C. Phillips, and B. Paniagua, "The use of SPHARM-PDM and mean latitude axis to evaluate airway changes," The Angle Orthodontist, vol. 86, no. 6, pp. 943-948, Nov. 2016. [URL]
  74. R. Vetreno, R. Yaxley, B. Paniagua, and F. Crews, "Diffusion tensor imaging reveals adolescent binge ethanol-induced brain structural integrity alterations in adult rats that correlate with behavioral dysfunction," Addiction Biology, vol. 21, no. 4, pp. 939-953, Jul. 2016. [URL]
  75. I. Oguz, J. Cates, M. Datar, B. Paniagua, T. Fletcher, C. Vachet, M. Styner, and R. Whitaker, "Entropy-based particle correspondence for shape populations," International Journal of Computer Assisted Radiology and Surgery, vol. 11, no. 7, pp. 1221-1232, Jul. 2016. [URL]
  76. L. Gomes, M. Gomes, J. Gonçalves, A. Ruellas, L. Wolford, B. Paniagua, E. Benavides, and L. Cevidanes, "Cone beam computed tomography-based models versus multislice spiral computed tomography-based models for assessing condylar morphology," Oral Surgery, Oral Medicine, Oral Pathology and Oral Radiology, vol. 121, no. 1, pp. 96-105, Jan. 2016. [URL]
  77. B. Paniagua, A. Ruellas, M. Yatabe, L. Gomes, M. Styner, S. Pizer, and L. Cevidanes, "Computer Assisted subclinical classification of TMJ OA," in AADR/CADR Annual Meeting (Los Angeles, California), 2016. [URL]
  78. B. Paniagua, D. Zukić, R. Ortiz, S. Aylward, B. Golden, T. Nguyen, and A. Enquobahrie, "Ultrasound-Guided Navigation System for Orthognathic Surgery," in MICCAI Workshop on Augmented Environments for Computer-Assisted Interventions, 2015. [URL]
  79. L. Cevidanes, A. Ruellas, J. Jomier, T. Nguyen, S. Pieper, F. Budin, M. Styner, and B. Paniagua, "Incorporating 3-dimensional models in online articles," American Journal of Orthodontics and Dentofacial Orthopedics, vol. 147, no. 5, pp. S195-S204, May 2015. [URL]
  80. L. Gomes, M. Gomes, B. Jung, B. Paniagua, A. Ruellas, J. Gonçalves, M. Styner, L. Wolford, and L. Cevidanes, "Diagnostic index of 3D osteoarthritic changes in TMJ condylar morphology," in SPIE Medical Imaging, 2015. [URL]
  81. L. Tu, M. Styner, J. Vicory, B. Paniagua, J. Prieto, D. Yang, and S. Pizer, "Skeletal shape correspondence via entropy minimization," in SPIE Medical Imaging, 2015. [URL]
  82. B. Paniagua, A. Ruellas, E. Benavides, S. Marron, L. Wolford, and L. Cevidanes, "Validation of CBCT for the computation of textural biomarkers," in SPIE Medical Imaging, 2015. [URL]
  83. B. Paniagua, J. Pera, F. Budin, L. Gomes, M. Styner, C. Lucia, and T. Nguyen, "Validation of TMJ osteoarthritis synthetic defect database created using non-rigid registration," in SPIE Medical Imaging, 2015. [URL]
  84. L. Gomes, M. Gomes, B. Jung, B. Paniagua, A. Ruellas, J. Gonçalves, M. Styner, L. Wolford, and L. Cevidanes, "Diagnostic index of three-dimensional osteoarthritic changes in temporomandibular joint condylar morphology," Journal of Medical Imaging, vol. 2, no. 3, pp. 034501, Jul. 2015. [URL]
  85. M. McMurray, I. Oguz, A. Rumple, B. Paniagua, M. Styner, and J. Johns, "Effects of prenatal cocaine exposure on early postnatal rodent brain structure and diffusion properties," Neurotoxicology and Teratology, vol. 47, pp. 80-88, Jan. 2015. [URL]
  86. T. Nguyen, J. Schilling, L. Cevidanes, and B. Paniagua, "Comparison of the Temporal Mandibular Joint 3D Surface and Volume Reconstructions using MRIs and CBCTs: A Pilot study.," in IADR/AADR/CADR General Session, 2015. [URL]
  87. L. Gomes, M. Gomes, A. Ruellas, J. Goncalves, B. Paniagua, and L. Cevidanes, "CBCT versus CT-Based Models on Assessing Condylar Morphology: Pilot Study," in IADR/AADR/CADR General Session (Boston, Massachusetts), 2015. [URL]
  88. B. Paniagua, A. Ruellas, E. Benavides, S. Marron, L. Wolford, and L. Cevidanes, "Textural Biomarkers of the Temporomandibular Joint Subchondral Bone," in IADR/AADR/CADR General Session (Boston, Massachusetts), 2015. [URL]
  89. B. Paniagua, A. Ruellas, M. Yatabe, L. Gomes, M. Styner, S. Pizer, and L. Cevidanes, "Staging of Temporomandibular Joint Osteoarthritis using Statistical Shape Modeling," in Proceedings of Shape Symposium, 2015.
  90. L. Tu, J. Vicory, S. Elhabian, B. Paniagua, J. Prieto, R. Whitacker, M. Styner, and S. Pizer, "Entropy-based Correspondence Improvement of Interpolated Skeletal Models," in Submitted to IEEE Information Processing in Medical Imaging, 2015.
  91. L. Bompard, S. Xu, M. Styner, B. Paniagua, M. Ahn, Y. Yuan, V. Jewells, W. Gao, D. Shen, H. Zhu, and W. Lin, "Multivariate Longitudinal Shape Analysis of Human Lateral Ventricles during the First Twenty-Four Months of Life," PLoS ONE, vol. 9, no. 9, pp. e108306, Sep. 2014. [URL]
  92. L. Cevidanes, D. Walker, J. Schilling, J. Sugai, W. Giannobile, B. Paniagua, E. Benavides, H. Zhu, J. Marron, B. Jung, D. Baranowski, J. Rhodes, A. Nackley, P. Lim, J. Ludlow, T. Nguyen, J. Goncalves, L. Wolford, S. Kapila, and M. Styner, "3D osteoarthritic changes in TMJ condylar morphology correlates with specific systemic and local biomarkers of disease," Osteoarthritis and Cartilage, vol. 22, no. 10, pp. 1657-1667, Oct. 2014. [URL]
  93. T. Nguyen, L. Cevidanes, B. Paniagua, H. Zhu, L. Koerich, and H. De Clerck, "Use of shape correspondence analysis to quantify skeletal changes associated with bone-anchored Class III correction," The Angle Orthodontist, vol. 84, no. 2, pp. 329-336, Mar. 2014. [URL]
  94. B. Jung, B. Paniagua, L. Cevidanes, J. Schilling, T. Nguyen, D. Walker, J. Goncalves, and J. Marron, "A 3D Morphology Index of TMJ OA," in AADR/CADR Annual Meeting (Charlotte, North Carolina), 2014. [URL]
  95. J. Schilling, E. Benavides, L. Gomes, M. Styner, V. Boen, J. Goncalves, T. Nguyen, B. Paniagua, and L. Cevidanes, "Regional 3D Superimposition to Assess Temporomandibular Joint Condylar Morphology," in AADR/CADR Annual Meeting (Charlotte, North Carolina), 2014. [URL]
  96. B. Paniagua, S. Chen, J. Rich, C. Phillips, and T. Nguyen, "Upper Airway shape changes after Bilateral Sagittal Split Osteotomies," in AADR/CADR Annual Meeting (Charlotte, North Carolina), 2014. [URL]
  97. D. Walker, J. Sugai, T. Nguyen, H. Zhu, D. Baranowski, S. Kapila, W. Giannobile, L. Cevidanes, J. Schilling, B. Paniagua, E. Benavides, M. Styner, J. Ludlow, A. Nackley, J. Rhodes, and P. Lim, "Integrated Biomolecular and 3D Model of Temporomandibular Joint Osteoarthritis," in Proceedings of the AADR/CADR Annual Meeting, 2014. [URL]
  98. J. Pera, T. Nguyen, F. Budin, C. Phillips, and B. Paniagua, "3DMeshMetric: An open source tool for quantitative 3D morphology assessment," in Proceedings of the AADR/CADR Annual Meeting (Charlotte, North Carolina), 2014. [URL]
  99. J. Goncalves, L. Wolford, D. Cassano, G. da Porciuncula, B. Paniagua, and L. Cevidanes, "Temporomandibular Joint Condylar Changes Following Maxillomandibular Advancement and Articular Disc Repositioning," Journal of Oral and Maxillofacial Surgery, vol. 71, no. 10, pp. 1759.e1-1759.e15, Oct. 2013. [URL]
  100. B. Paniagua, A. Lyall, J. Berger, C. Vachet, R. Hamer, S. Woolson, W. Lin, J. Gilmore, and M. Styner, "Lateral ventricle morphology analysis via mean latitude axis," in Proceedings of SPIE--the International Society for Optical Engineering, 2013. [URL]
  101. B. Paniagua, O. Emodi, J. Hill, J. Fishbaugh, L. Pimenta, S. Aylward, A. Enquobahrie, G. Gerig, J. Gilmore, J. van Aalst, and M. Styner, "3D of brain shape and volume after cranial vault remodeling surgery for craniosynostosis correction in infants," in SPIE Medical Imaging, 2013. [URL]
  102. S. Schobel, N. Chaudhury, U. Khan, B. Paniagua, M. Styner, I. Asllani, B. Inbar, C. Corcoran, J. Lieberman, H. Moore, and S. Small, "Imaging patients with psychosis and a mouse model establishes a spreading pattern of hippocampal dysfunction and implicates glutamate as a driver.," Neuron, vol. 78, no. 1, pp. 81-93, Apr. 2013. [URL]
  103. J. Goncalves, L. Wolford, D. Cassano, G. Porciuncula, B. Paniagua, and L. Cevidanes, "TMJ Condylar Changes Following Maxillomandibular Advancement And Disc Repositioning," in IADR/AADR/CADR General Session (Seattle, Washington), 2013. [URL]
  104. D. Walker, E. Benavides, L. Cevidanes, J. Schilling, J. Ludlow, P. Lim, M. Styner, T. Nguyen, D. Baranowski, and B. Paniagua, "TMJ Osteoarthritis: A Clinical and CBCT Investigation," in IADR/AADR/CADR General Session (Seattle, Washington), 2013. [URL]
  105. O. Lindberg, M. Walterfang, J. Looi, N. Malykhin, P. Östberg, B. Zandbelt, M. Styner, B. Paniagua, D. Velakoulis, E. Örndahl, and L. Wahlund, "Hippocampal Shape Analysis in Alzheimer's Disease and Frontotemporal Lobar Degeneration Subtypes," Journal of Alzheimer's Disease, vol. 30, no. 2, pp. 355-365, May 2012. [URL]
  106. A. AlHadidi, L. Cevidanes, B. Paniagua, R. Cook, F. Festy, and D. Tyndall, "3D quantification of mandibular asymmetry using the SPHARM-PDM tool box," International Journal of Computer Assisted Radiology and Surgery, vol. 7, no. 2, pp. 265-271, Mar. 2012. [URL]
  107. B. Paniagua, L. Bompard, J. Cates, R. Whitaker, M. Datar, C. Vachet, and M. Styner, "Combined SPHARM-PDM and entropy-based particle systems shape analysis framework," in Proceedings of SPIE--the International Society for Optical Engineering, 2012. [URL]
  108. A. AlHadidi, L. Cevidanes, R. Cook, F. Festy, D. Tyndall, and B. Paniagua, "The use of a custom made atlas as a template for corrective surgeries of asymmetric patients," in SPIE Medical Imaging, 2012. [URL]
  109. E. Maltbie, K. Bhatt, B. Paniagua, R. Smith, M. Graves, M. Mosconi, S. Peterson, S. White, J. Blocher, M. El-Sayed, H. Hazlett, and M. Styner, "Asymmetric bias in user guided segmentations of brain structures," NeuroImage, vol. 59, no. 2, pp. 1315-1323, Jan. 2012. [URL]
  110. T. Nguyen, L. Cevidanes, L. De Paula, B. Paniagua, M. Styner, H. Zhu, and H. Declerck, "3-D Evaluation of Treatment Outcomes following Class III Bone-Anchored Traction," in IADR/LAR General Session (Iguaçu Falls, Brazil), 2012. [URL]
  111. F. Carvalho, A. Hajati, B. Paniagua, M. Almeida, and L. Cevidanes, "3D Condylar Remodeling in Patients with Early Rheumatoid Arthritis," in IADR/LAR General Session (Iguaçu Falls, Brazil), 2012. [URL]
  112. L. Cevidanes, D. Walker, B. Paniagua, M. Styner, T. Nguyen, P. Lim, J. Ludlow, and S. Kapila, "Pilot 3D Image Analysis of Temporomandibular Joint Osteoarthritis," in IADR/LAR General Session (Iguaçu Falls, Brazil), 2012. [URL]
  113. L. Cunha, P. Mello, B. Paniagua, J. Goncalves, and L. Cevidanes, "TMJ Condilar Changes After Bimaxillary Advancement and Disc Repositioning," in IADR/LAR General Session (Iguaçu Falls, Brazil), 2012. [URL]
  114. D. Mansur, G. Porciuncula, B. Paniagua, J. Goncalves, and L. Cevidanes, "Variability of 3D Morphology in Condylar Resection/Joint Prosthesis Patients," in IADR/LAR General Session (Iguaçu Falls, Brazil), 2012. [URL]
  115. A. Lyall, B. Paniagua, L. Zhaohua, H. Zhu, F. Shi, W. Lin, D. Shen, J. Gilmore, and M. Styner, "Longitudinal lateral ventricle morphometry related to prenatal measures as a biomarker of normal development," in MICCAI Workshop on Perinatal and Paediatric Imaging: PaPI, 2012.
  116. B. Paniagua, L. Cevidanes, H. Zhu, and M. Styner, "Outcome quantification using SPHARM-PDM toolbox in orthognathic surgery," International Journal of Computer Assisted Radiology and Surgery, vol. 6, no. 5, pp. 617-626, Sep. 2011. [URL]
  117. B. Paniagua, A. Alhadidi, L. Cevidanes, M. Styner, and I. Oguz, "Mandibular asymmetry characterization using generalized tensor-based morphometry," in IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2011. [URL]
  118. J. Lee, C. Ehlers, F. Crews, M. Niethammer, F. Budin, B. Paniagua, K. Sulik, J. Johns, M. Styner, and I. Oguz, "Automatic cortical thickness analysis on rodent brain," in Proceedings of SPIE--the International Society for Optical Engineering, 2011. [URL]
  119. L. Cevidanes, A. Alhadidi, B. Paniagua, M. Styner, J. Ludlow, A. Mol, T. Turvey, W. Proffit, and P. Rossouw, "Three-dimensional quantification of mandibular asymmetry through cone-beam computerized tomography," Oral Surgery, Oral Medicine, Oral Pathology, Oral Radiology, and Endodontology, vol. 111, no. 6, pp. 757-770, Jun. 2011. [URL]
  120. B. Paniagua, L. Cevidanes, D. Walker, H. Zhu, R. Guo, and M. Styner, "Clinical application of SPHARM-PDM to quantify temporomandibular joint osteoarthritis," Computerized Medical Imaging and Graphics, vol. 35, no. 5, pp. 345-352, Jul. 2011. [URL]
  121. M. Datar, Y. Gur, B. Paniagua, M. Styner, and R. Whitaker, "Geometric correspondence for ensembles of nonregular shapes.," Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention, vol. 14, no. Pt 2, pp. 368-75, Jan. 2011. [URL]
  122. L. Cevidanes, B. Paniagua, L. De Paula, R. Guo, H. Zhu, M. Styner, and C. Phillips, "One Year Assessment of Surgical Outcomes Using Shape Correspondence," in IADR/AADR/CADR General Session (San Diego, California), 2011. [URL]
  123. A. Alhadidi, L. Cevidanes, B. Paniagua, J. Ludlow, and A. Mol, "Shape Correspondence validation for 3D quantification of mandibular asymmetry," in IADR/AADR/CADR General Session (San Diego, California), 2011. [URL]
  124. B. Paniagua, M. Vega-Rodŕiguez, J. Gómez-Pulido, and J. Sánchez-Pérez, "Automatic texture characterization using Gabor filters and neurofuzzy computing," The International Journal of Advanced Manufacturing Technology, vol. 52, no. 1-4, pp. 15-32, May 2010. [URL]
  125. D. Walker, L. Cevidanes, B. Paniagua, H. Zhu, M. Styner, and P. Lim, "Validation of Shape Correspondence for Quantification of Condylar Resorption," in AADR/CADR Annual Meeting, 2010. [URL]
  126. B. Paniagua, L. Cevidanes, H. Zhu, and M. Styner, "Surgical Outcome Quantification using SPHARM-PDM Toolbox," in IADR/PER General Session, 2010. [URL]
  127. L. Cevidanes, B. Paniagua, L. De Paula, and M. Styner, "Shape Analysis of Stability following Skeletal Class III Surgery," in IADR/PER General Session (Barcelona, Spain), 2010. [URL]
  128. B. Paniagua, M. Vega-Rodŕiguez, J. Gomez-Pulido, and J. Sanchez-Perez, "Improving the industrial classification of cork stoppers by using image processing and Neuro-Fuzzy computing," Journal of Intelligent Manufacturing, vol. 21, no. 6, pp. 745-760, Mar. 2009. [URL]
  129. B. Paniagua, M. Styner, M. Mark, D. Pantazis, and M. Niethammer, "Local Shape Analysis using MANCOVA," Insight Journal, 2009. [URL]
  130. B. Paniagua, M. Vega-Rodriguez, J. Gomez-Pulido, and J. Sanchez-Perez, "Can fuzzy logic improve the cork quality classification? A comparative study," in Proceedings of the IEEE Mediterranean Electrotechnical Conference, 2008. [URL]
  131. B. Paniagua, M. Vega-Rodriguez, P. Bustos-Garcia, J. Gomez-Pulido, and J. Sanchez-Perez, "Advanced Texture Analysis in Cork Quality Detection," in 5th IEEE International Conference on Industrial Informatics, 2007. [URL]
  132. B. Paniagua, M. Vega-Rodriguez, J. Sanchez-Perez, and J. Gomez-Pulido, "Image Processing and Neuro-Fuzzy Computing for Cork Quality Classification," in 5th IEEE International Conference on Industrial Informatics, 2007. [URL]

Bibliography generated 2025-10-07-11:00:07 (8275)