Kitware Staff Publications

  1. M. Hanwell, C. Harris, A. Genova, M. Haghighatlari, M. El Khatib, P. Avery, J. Hachmann, and W. Jong, "Open Chemistry, JupyterLab , REST , and quantum chemistry," International Journal of Quantum Chemistry, Sep. 2020. [URL]
  2. B. Vasu and A. Savakis, "Resilience and Plasticity of Deep Network Interpretations for Aerial Imagery," IEEE Access, 2020. [URL]
  3. B. Moore, S. Montgomery, M. Niethammer, H. Greer, and S. Aylward, "Automatic Optic Nerve Sheath Measurement in Point-of-Care Ultrasound," in Medical Ultrasound, and Preterm, Perinatal and Paediatric Image Analysis. Springer International Publishing, 2020, pp. 23-32. [URL]
  4. J. Scott, B. Ravichandran, C. Funk, R. Collins, and Y. Liu, "From Image to Stability: Learning Dynamics from Human Pose," in European Conference on Computer Vision 2020, 2020.
  5. B. Vasu and C. Long, "Iterative and Adaptive Sampling with Spatial Attention for Black-Box Model Explanations," in IEEE Winter Conference on Applications of Computer Vision (WACV), 2020. [URL]
  6. A. Islam, C. Long, A. Basharat, and A. Hoogs, "Dual-Order Attentive Generative Adversarial Network for Image Copy-Move Forgery Detection and Localization," in Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition, 2020.
  7. J. Bianchi, J. Gonçalves, A. Ruellas, J. Vimort, M. Yatabe, B. Paniagua, P. Hernandez, E. Benavides, F. Soki, and L. Cevidanes, "Software comparison to analyze bone radiomics from high resolution CBCT scans of mandibular condyles," Dentomaxillofacial Radiology, vol. 48, no. 6, pp. 20190049, Sep. 2019. [URL]
  8. B. Shoukri, J. Prieto, A. Ruellas, M. Yatabe, J. Sugai, M. Styner, H. Zhu, C. Huang, B. Paniagua, S. Aronovich, L. Ashman, E. Benavides, P. de Dumast, N. Ribera, C. Mirabel, L. Michoud, Z. Allohaibi, M. Ioshida, L. Bittencourt, L. Fattori, L. Gomes, and L. Cevidanes, "Minimally Invasive Approach for Diagnosing TMJ Osteoarthritis," Journal of Dental Research, vol. 98, no. 10, pp. 1103-1111, Sep. 2019. [URL]
  9. B. Vasu, J. Barnett, R. Collins, and A. Hoogs, "Explainability for Content-Based Image Retrieval," in Proceedings of the MSS National Symposium on Sensor and Data Fusion, 2019.
  10. M. Yatabe, J. Prieto, M. Styner, H. Zhu, A. Ruellas, B. Paniagua, F. Budin, E. Benavides, B. Shoukri, L. Michoud, N. Ribera, and L. Cevidanes, "3D superimposition of craniofacial imaging—The utility of multicentre collaborations," Orthodontics & Craniofacial Research, vol. 22, no. S1, pp. 213-220, May 2019. [URL]
  11. A. Bray, J. Webb, A. Enquobahrie, J. Vicory, J. Heneghan, R. Hubal, S. TerMaath, P. Asare, and R. Clipp, "Pulse Physiology Engine: an Open-Source Software Platform for Computational Modeling of Human Medical Simulation," SN Comprehensive Clinical Medicine, Mar. 2019. [URL]
  12. R. Clipp, J. Webb, R. Metoyer, and A. Bray, "Simulation of Asthma Attack and Inhaler Actuation using the Pulse Physiology Engine," in BMES Frontiers in Medical Devices, 2019. [URL]
  13. M. Ioshida, J. Prieto, C. Huang, A. Ruellas, M. Yatabe, M. Styner, L. Cevidanes, L. Michoud, B. Paniagua, J. Bianchi, and J. Gonçalves, "A web-based system for statistical shape analysis in temporomandibular joint osteoarthritis," in Medical Imaging 2019: Biomedical Applications in Molecular, Structural, and Functional Imaging, 2019. [URL]
  14. B. Paniagua, J. Prothero, J. Vimort, A. Ruellas, J. Marron, L. Cevidanes, E. Benavides, M. McCormick, and P. Hernandez-Cerdan, "Advanced statistical analysis to classify high dimensionality textural probability-distribution matrices," in Medical Imaging 2019: Biomedical Applications in Molecular, Structural, and Functional Imaging, 2019. [URL]
  15. L. Tu, G. Rogers, M. Linguraru, A. Porras, A. Oh, N. Lepore, G. Buck, D. Tsering, A. Enquobahrie, and R. Keating, "Quantitative evaluation of local head malformations from 3 dimensional photography: application to craniosynostosis," in Medical Imaging 2019: Computer-Aided Diagnosis, 2019. [URL]
  16. S. Horvath, V. Arikatla, K. Cleary, K. Sharma, A. Rosenberg, and A. Enquobahrie, "Towards an advanced virtual ultrasound-guided renal biopsy trainer," in Medical Imaging 2019: Image-Guided Procedures, Robotic Interventions, and Modeling, 2019. [URL]
  17. J. Zupnik, M. Ioshida, M. Yatabe, A. Ruellas, L. Gomes, S. Aronovich, E. Benavides, S. Edwards, B. Paniagua, and L. Cevidanes, "Three-dimensional analysis of condylar changes in surgical correction for open bite patients with skeletal class II and class III malocclusions," International Journal of Oral and Maxillofacial Surgery, vol. 48, no. 6, pp. 739-745, Jun. 2019. [URL]
  18. B. Vasu and A. Savakis, "Visualizing the Resilience of Deep Convolutional Network Interpretations.," in IEEE Conference on Computer Vision and Pattern Recognition (CVPR) Workshops, 2019.
  19. B. Dong, R. Collins, and A. Hoogs, "Explainability for Content-Based Image Retrieval," in Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition Workshop on Explainable Artificial Intelligence (AI), 2019.
  20. A. Lasso, J. Fillion-Robin, G. Fichtinger, M. Asselin, C. Pinter, K. Martin, and J. Vimort, "SlicerVR for image-guided therapy planning in immersive virtual reality," in The Hamlyn Symposium on Medical Robotics, 2019. [URL]
  21. P. Yushkevich, A. Pashchinskiy, I. Oguz, S. Mohan, J. Schmitt, J. Stein, D. Zukić, J. Vicory, M. McCormick, N. Yushkevich, N. Schwartz, Y. Gao, and G. Gerig, "User-Guided Segmentation of Multi-modality Medical Imaging Datasets with ITK-SNAP," Neuroinformatics, vol. 17, no. 1, pp. 83-102, Jan. 2019. [URL]
  22. O. Ruebel, A. Tritt, B. Dichter, T. Braun, N. Cain, N. Clack, T. Davidson, M. Dougherty, J. Fillion-Robin, N. Graddis, M. Grauer, J. Kiggins, L. Niu, D. Ozturk, W. Schroeder, I. Soltesz, F. Sommer, K. Svoboda, L. Ng, L. Frank, and K. Bouchard, "NWB:N 2.0: An Accessible Data Standard for Neurophysiology," Neuroscience, Jan. 2019. [URL]
  23. M. Brown, K. Fieldhouse, E. Swears, P. Tunison, A. Romlein, and A. Hoogs, "Multi-Modal Detection Fusion on a Mobile UGV for Wide-Area, Long-Range Surveillance," in 2019 IEEE Winter Conference on Applications of Computer Vision (WACV), 2019. [URL]
  24. A. Enquobahrie, S. Horvath, S. Arikatla, A. Rosenberg, K. Cleary, and K. Sharma, "Development and face validation of ultrasound-guided renal biopsy virtual trainer," Healthcare Technology Letters, vol. 6, no. 6, pp. 210-213, Dec. 2019. [URL]
  25. R. Zhang, D. Zukić, D. Byrd, A. Enquobahrie, A. Alessio, K. Cleary, F. Banovac, and P. Kinahan, "PET/CT-guided biopsy with respiratory motion correction," International Journal of Computer Assisted Radiology and Surgery, vol. 14, no. 12, pp. 2187-2198, Dec. 2019. [URL]
  26. A. Porras, L. Tu, D. Tsering, E. Mantilla, A. Oh, A. Enquobahrie, R. Keating, G. Rogers, and M. Linguraru, "Quantification of Head Shape from Three-Dimensional Photography for Presurgical and Postsurgical Evaluation of Craniosynostosis:," Plastic and Reconstructive Surgery, vol. 144, no. 6, pp. 1051e-1060e, Dec. 2019. [URL]
  27. P. Avery, X. Wang, C. Oses, E. Gossett, D. Proserpio, C. Toher, S. Curtarolo, and E. Zurek, "Predicting superhard materials via a machine learning informed evolutionary structure search," npj Computational Materials, vol. 5, no. 1, pp. 89, Dec. 2019. [URL]
  28. P. Avery, C. Toher, S. Curtarolo, and E. Zurek, "XtalOpt Version r12: An open-source evolutionary algorithm for crystal structure prediction," Computer Physics Communications, vol. 237, pp. 274-275, Apr. 2019. [URL]
  29. D. Chittajallu, B. Dong, P. Tunison, R. Collins, K. Wells, J. Fleshman, G. Sankaranarayanan, S. Schwaitzberg, L. Cavuoto, and A. Enquobahrie, "XAI-CBIR: Explainable AI System for Content based Retrieval of Video Frames from Minimally Invasive Surgery Videos," in 2019 IEEE 16th International Symposium on Biomedical Imaging (ISBI 2019), 2019. [URL]
  30. T. Czernuszewicz, V. Papadopoulou, J. Rojas, R. Rajamahendiran, J. Perdomo, J. Butler, M. Herlacher, G. O'Connell, D. Zukić, S. Aylward, P. Dayton, and R. Gessner, "A preclinical ultrasound platform for widefield 3D imaging of rodent tumors," in American Association for Cancer Research Annual Meeting, 2019.
  31. D. Sharma, Z. Shanis, C. Reddy, S. Gerber, and A. Enquobahrie, "Active Learning Technique for Multimodal Brain Tumor Segmentation Using Limited Labeled Images," in Domain Adaptation and Representation Transfer and Medical Image Learning with Less Labels and Imperfect Data. Springer International Publishing, 2019, pp. 148-156. [URL]
  32. Z. Shanis, S. Gerber, M. Gao, and A. Enquobahrie, "Intramodality Domain Adaptation Using Self Ensembling and Adversarial Training," in Domain Adaptation and Representation Transfer and Medical Image Learning with Less Labels and Imperfect Data. Springer International Publishing, 2019, pp. 28-36. [URL]
  33. M. Yatabe, L. Gomes, A. Ruellas, J. Lopinto, L. Macron, B. Paniagua, F. Budin, J. Prieto, M. Ioshida, and L. Cevidanes, "Challenges in measuring angles between craniofacial structures," Journal of Applied Oral Science, vol. 27, pp. e20180380, 2019. [URL]
  34. B. Richards, O. Beijbom, M. Campbell, M. Clarke, G. Cutter, M. Dawkins, D. Edington, D. Hart, M. Hill, A. Hoogs, D. Kriegman, E. Moreland, T. Oliver, W. Michaels, M. Placentino, A. Rollo, C. Thompson, F. Wallace, I. Williams, and K. Williams, "Automated Analysis of Underwater Imagery: Accomplishments, Products, and Vision," NOAA technical memorandum NMFS PIFSC, 2019. [URL]
  35. C. Funk, J. Crall, W. Hicks, C. Law, P. Tunison, R. Blue, A. Hoogs, T. Rovito, and A. Maltenfort, "WEFT Feature Detection and Mensuration for Airplane Classification in Satellite Imagery," in MSS National Symposium on Sensor and Data Fusion, 2019.
  36. D. Chittajallu, A. Basharat, P. Tunison, S. Horvath, K. Wells, S. Leeds, J. Fleshman, G. Sankaranarayanan, and A. Enquobahrie, "Content-based retrieval of video segments from minimally invasive surgery videos using deep convolutional video descriptors and iterative query refinement," in Medical Imaging 2019: Image-Guided Procedures, Robotic Interventions, and Modeling, 2019.
  37. C. Long, A. Basharat, and A. and Hoogs, "A Coarse-to-fine Deep Convolutional Neural Network Framework for Frame Duplication Detection and Localization in Forged Videos," in Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition Workshops (CVPRW), 2019.
  38. C. Long, R. Collins, E. Swears, and A. Hoogs, "Deep Neural Networks In Fully Connected CRF For Image Labeling With Social Network Metadata," in Proceedings of the IEEE Winter Conference on Applications of Computer Vision (WACV), 2019.
  39. M. Leotta, J. Shan, X. Zhang, C. Long, B. Xu, M. Purri, M. Zins, B. Jacquet, K. Dana, S. Seida, M. Berlin, Z. Li, J. Xue, and D. Lipsa, "Danesfield: Integrating Deep Learning and Classical Methods for Multiview Semantic 3D Modeling," in Proceedings of the MSS National Symposium on Sensor and Data Fusion, 2019.
  40. M. Leotta, C. Long, B. Jacquet, M. Zins, D. Lipsa, J. Shan, B. Xu, Z. Li, X. Zhang, S. Chang, M. Purri, J. Xue, and K. Dana, "Urban Semantic 3D Reconstruction From Multiview Satellite Imagery," in The IEEE Conference on Computer Vision and Pattern Recognition (CVPR) Workshops: EarthVision, 2019. Winner, Best Paper Award. [URL]
  41. J. Prothero, J. Vimort, A. Ruellas, J. Marron, H. Shah, L. Cevidanes, E. Benavides, and B. Paniagua, "Advanced statistical analysis to classify high dimensionality textural probability-distribution matrices," in submitted to Society of Photographic Instrumentation Engineers (SPIE) in Medical Imaging Conference 2019, 2019.
  42. P. Hernandez-Cerdan, B. Paniagua, J. Prothero, J. Marron, E. Livingston, T. Bateman, and M. McCormick, "Methods for quantitative characterization of bone injury from computed-tomography images," in submitted to Society of Photographic Instrumentation Engineers (SPIE) in Medical Imaging Conference 2019, 2019.
  43. A. AlHadidi, B. Paniagua, R. Cook, D. Tyndall, Z. Baqain, and L. Cevidanes, "The use of a custom-made virtual template for corrective surgeries of asymmetric patients: proof of principle and a multi-center end-user survey," International Journal of Computer Assisted Radiology and Surgery, Sep. 2018. [URL]
  44. D. Zukić, D. Byrd, P. Kinahan, and A. Enquobahrie, "Calibration Software for Quantitative PET/CT Imaging Using Pocket Phantoms," Tomography: A Journal for Imaging Research, vol. 4, no. 3, pp. 148-158, Sep. 2018. [URL]
  45. V. Arikatla, S. Horvath, Y. Fu, L. Cavuoto, S. De, S. Schwaitzberg, and A. Enquobahrie, "Development and face validation of a virtual camera navigation task trainer," Surgical Endoscopy, Oct. 2018. [URL]
  46. Y. Fu, L. Cavuoto, D. Qi, K. Panneerselvam, G. Yang, V. Artikala, A. Enquobahrie, S. De, and S. Schwaitzberg, "Validation of a virtual intracorporeal suturing simulator," Surgical Endoscopy, Oct. 2018. [URL]
  47. F. Rahman, B. Vasu, and A. Savakis, "Resilience and Self-Healing of Deep Convolutional Object Detectors," in 2018 25th IEEE International Conference on Image Processing (ICIP), 2018. [URL]
  48. M. Phillips, R. Blue, M. Turek, A. Hoogs, and T. Rovito, "Deep Learning for Classification of Satellite Imagery," in Proceedings of the MSS National Symposium on Sensor and Data Fusion, 2018.
  49. C. Law, R. Blue, D. Stoup, P. Tunison, A. Hoogs, B. Vasu, J. Van Cor, J. Kerekes, A. Savakis, T. Rovito, C. Stansifer, and S. Thomas, "Deep Learning for Object Detection and Classification in Satellite Imagery," in Proceedings of the MSS National Symposium on Sensor and Data Fusion, 2018.
  50. J. Crall, J. Becker, P. Tunison, M. Dawkins, A. Basharat, R. Blue, M. Turek, and A. Hoogs, "Deep Learning for Small Object Detection in Satellite Infrared Imagery," in Proceedings of the MSS National Symposium on Sensor and Data Fusion, 2018.
  51. M. Brown, K. Fieldhouse, E. Swears, P. Tunison, A. Romlein, and A. Hoogs, "Multi-Modal Detection Fusion on Mobile UGV for Squad-Level Threat Alerting," in Proceedings of the MSS National Symposium on Sensor and Data Fusion, 2018.
  52. A. Basharat, P. Tunison, and A. Hoogs, "Rapid Learning of Maritime Scenes Through Query Refinement," in Proceedings of the MSS National Symposium on Sensor and Data Fusion, 2018.
  53. F. Rahman, B. Vasu, J. Cor, J. Kerekes, and A. Savakis, "Siamese Network with Multi-Level Features for Patch-Based Change Detection in Satellite Imagery," in 2018 IEEE Global Conference on Signal and Information Processing (GlobalSIP), 2018. [URL]
  54. B. Paniagua, H. Shah, P. Hernandez-Cerdan, F. Budin, D. Chittajallu, R. Walter, A. Mol, A. Khan, and J. Vimort, "Automatic quantification framework to detect cracks in teeth," in Medical Imaging 2018: Biomedical Applications in Molecular, Structural, and Functional Imaging, 2018. [URL]
  55. J. Prothero, M. McCormick, B. Paniagua, J. Vimort, A. Ruellas, J. Marron, L. Cevidanes, and E. Benavides, "Detection of bone loss via subchondral bone analysis," in Medical Imaging 2018: Biomedical Applications in Molecular, Structural, and Functional Imaging, 2018. [URL]
  56. J. Prieto, P. de Dumast, C. Mirabel, B. Paniagua, L. Cevidanes, N. Tubau, M. Styner, A. Ruellas, and M. Yatabe, "SVA: shape variation analyzer," in Medical Imaging 2018: Biomedical Applications in Molecular, Structural, and Functional Imaging, 2018. [URL]
  57. I. Lyu, J. Perdomo, G. Yapuncich, B. Paniagua, D. Boyer, and M. Styner, "Group-wise shape correspondence of variable and complex objects," in Medical Imaging 2018: Image Processing, 2018. [URL]
  58. J. Parham, C. Stewart, J. Crall, D. Rubenstein, J. Holmberg, and T. Berger-Wolf, "An animal detection pipeline for identification," in Proceedings of the IEEE Winter Conference on Applications of Computer Vision, 2018. [URL]
  59. V. Arikatla, M. Tyagi, A. Enquobahrie, T. Nguyen, G. Blakey, R. White, and B. Paniagua, "High fidelity virtual reality orthognathic surgery simulator," in SPIE Medical Imaging, 2018. [URL]
  60. S. Horvath, B. Paniagua, J. Andruejol, A. Porras, M. Linguraru, and A. Enquobahrie, "Osteotomy planner: an open-source tool for osteotomy simulation," in SPIE Medical Imaging, 2018. [URL]
  61. B. Vasu, F. Rahman, and A. Savakis, "Aerial-CAM: Salient Structures and Textures in Network Class Activation Maps of Aerial Imagery," in 2018 IEEE 13th Image, Video, and Multidimensional Signal Processing Workshop (IVMSP), 2018. [URL]
  62. P. de Dumast, C. Mirabel, L. Cevidanes, A. Ruellas, M. Yatabe, M. Ioshida, N. Ribera, L. Michoud, L. Gomes, C. Huang, H. Zhu, L. Muniz, B. Shoukri, B. Paniagua, M. Styner, S. Pieper, F. Budin, J. Vimort, L. Pascal, and J. Prieto, "A web-based system for neural network based classification in temporomandibular joint osteoarthritis," Computerized Medical Imaging and Graphics, vol. 67, pp. 45-54, Jul. 2018. [URL]
  63. A. Porras, B. Paniagua, S. Ensel, R. Keating, G. Rogers, A. Enquobahrie, and M. Linguraru, "Locally Affine Diffeomorphic Surface Registration and Its Application to Surgical Planning of Fronto-Orbital Advancement," IEEE Transactions on Medical Imaging, vol. 37, no. 7, pp. 1690-1700, Jul. 2018. [URL]
  64. J. Fillion-Robin, M. McCormick, O. Padron, M. Smolens, M. Grauer, and M. Sarahan, "jcfr/scipy_2018_scikit-build_talk: SciPy 2018 Talk | scikit-build: A Build System Generator for CPython C/C++/Fortran/Cython Extensions," presented at SciPy 2018, 2018. [URL]
  65. R. Clipp, J. Vicory, S. Horvath, S. Mitran, J. Kimbell, J. Rhee, and A. Enquobahrie, "An Interactive, Patient-Specific Virtual Surgical Planning System for Upper Airway Obstruction Treatments," in Proceedings of the Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 2018. [URL]
  66. P. Avery, Z. Falls, and E. Zurek, "XtalOpt version r11: An open-source evolutionary algorithm for crystal structure prediction," Computer Physics Communications, vol. 222, pp. 418-419, Jan. 2018. [URL]
  67. L. Tu, M. Styner, J. Vicory, S. Elhabian, R. Wang, J. Hong, B. Paniagua, J. Prieto, D. Yang, R. Whitaker, and S. Pizer, "Skeletal Shape Correspondence Through Entropy," IEEE Transactions on Medical Imaging, vol. 37, no. 1, pp. 1-11, Jan. 2018. [URL]
  68. B. Levin, Y. Jiang, E. Padgett, S. Waldon, C. Quammen, C. Harris, U. Ayachit, M. Hanwell, P. Ercius, D. Muller, and R. Hovden, "Tutorial on the Visualization of Volumetric Data Using tomviz," Microscopy Today, vol. 26, no. 1, pp. 12-17, Jan. 2018. [URL]
  69. P. Avery, H. Ludowieg, J. Autschbach, and E. Zurek, "Extended Hückel Calculations on Solids Using the Avogadro Molecular Editor and Visualizer," Journal of Chemical Education, vol. 95, no. 2, pp. 331-337, Feb. 2018. [URL]
  70. A. Oh, M. Mastromanolis, B. Paniagua, A. Enquobahrie, M. Linguraru, L. Tu, A. Porras, N. Lepore, D. Tsering, R. Keating, and G. Rogers, "Radiation-free quantification of head malformations in craniosynostosis patients from 3D photography," in Medical Imaging 2018: Computer-Aided Diagnosis, 2018. [URL]
  71. L. Gomes, L. Soares Cevidanes, M. Gomes, A. Carlos de Oliveira Ruellas, D. Obelenis Ryan, B. Paniagua, L. Wolford, and J. Gonçalves, "Three-dimensional quantitative assessment of surgical stability and condylar displacement changes after counterclockwise maxillomandibular advancement surgery: Effect of simultaneous articular disc repositioning," American Journal of Orthodontics and Dentofacial Orthopedics, vol. 154, no. 2, pp. 221-233, Aug. 2018. [URL]
  72. A. Lasso, H. Nam, P. Dinh, C. Pinter, J. Fillion-Robin, S. Pieper, S. Jhaveri, J. Vimort, K. Martin, M. Asselin, F. McGowan, R. Kikinis, G. Fichtinger, and M. Jolley, "Interaction with Volume-Rendered Three-Dimensional Echocardiographic Images in Virtual Reality," Journal of the American Society of Echocardiography, Aug. 2018. [URL]
  73. J. Fishbaugh, L. Pascal, L. Fischer, T. Nguyen, C. Boen, J. Goncalves, G. Gerig, and B. Paniagua, "Estimating shape correspondence for populations of objects with complex topology," in 2018 IEEE 15th International Symposium on Biomedical Imaging (ISBI 2018), 2018. [URL]
  74. H. Greer, S. Gerber, M. Niethammer, R. Kwitt, M. McCormick, D. Chittajallu, N. Siekierski, M. Oetgen, K. Cleary, and S. Aylward, "Scoliosis screening and monitoring using self contained ultrasound and neural networks," in Proceedings of the IEEE International Symposium on Biomedical Imaging, 2018. [URL]
  75. D. Chittajallu, N. Siekierski, S. Lee, S. Gerber, J. Beezley, D. Manthey, D. Gutman, and L. Cooper, "Vectorized persistent homology representations for characterizing glandular architecture in histology images," in Proceedings of the IEEE International Symposium on Biomedical Imaging, 2018. [URL]
  76. M. Kim, J. Kress, J. Choi, N. Podhorszki, S. Klasky, M. Wolf, K. Mehta, K. Huck, B. Geveci, S. Phillip, R. Maynard, H. Guo, T. Peterka, K. Moreland, C. Chang, J. Dominski, M. Churchill, and D. Pugmire, "In Situ Analysis and Visualization of Fusion Simulations: Lessons Learned," in High Performance Computing. Springer International Publishing, 2018, pp. 230-242. [URL]
  77. D. Chittajallu, M. McCormick, S. Gerber, T. Czernuszewicz, R. Gessner, M. Willis, M. Niethammer, R. Kwitt, and S. Aylward, "Image-based methods for phase estimation, gating and temporal super-resolution of cardiac ultrasound," IEEE Transactions on Biomedical Engineering, pp. 1-1, 2018. [URL]
  78. S. Gerber, M. Niethammer, M. Styner, and S. Aylward, "Exploratory Population Analysis with Unbalanced Optimal Transport," in Medical Image Computing and Computer Assisted Intervention – MICCAI 2018. Springer International Publishing, 2018, pp. 464-472. [URL]
  79. T. Czernuszewicz, V. Papadopoulou, J. Rojas, R. Rajamahendiran, J. Perdomo, J. Butler, M. Harlacher, G. O’Connell, D. Zukić, S. Aylward, P. Dayton, and R. Gessner, "A new preclinical ultrasound platform for widefield 3D imaging of rodents," Review of Scientific Instruments, vol. 89, no. 7, pp. 075107, 2018. [URL]
  80. J. Vicory, L. Pascal, P. Hernandez, J. Fishbaugh, J. Prieto, M. Mostapha, C. Huang, H. Shah, J. Hong, Z. Liu, L. Michoud, J. Fillion-Robin, G. Gerig, H. Zhu, S. Pizer, M. Styner, and B. Paniagua, "SlicerSALT: Shape AnaLysis Toolbox," in Shape in Medical Imaging. Springer International Publishing, 2018, pp. 65-72. [URL]
  81. T. Nguyen, B. Paniagua, L. Pascal, J. Fishbaugh, C. Boen, J. Goncalves, L. Fischer, and T. Jackson, "A New Method for Quantifying Craniofacial Shape Changes," in 2018 IADR/PER General Session (London, England), 2018. [URL]
  82. M. Goljan, J. Fridrich, and M. Kirchner, "Image Manipulation Detection Using Sensor Linear Pattern," in IS&T Electronic Imaging: Media Watermarking, Security, and Forensics, 2018. [URL]
  83. F. Gessa, P. Asare, A. Bray, R. Clipp, and M. Poler, "Towards A Test and Validation Framework for Closed-Loop Physiology Management Systems for Critical and Perioperative Care," in Medical Cyber Physical Systems Workshop, 2018.
  84. C. McDaniel, N. Dunlop, R. White, Jr, G. Blakey, T. Nguyen, and B. Paniagua, "High fidelity virtual reality orthognathic surgery simulator," in Proceedings of the Annual Conference of the American College of Oral and Maxillofacial Surgeons, 2018.
  85. D. Pugmire, A. Yenpure, M. Kim, J. Kress, R. Maynard, H. Childs, and B. Hentschel, "Performance-Portable Particle Advection with VTK-m," in Proceedings of the Eurographics Symposium on Parallel Graphics and Visualization, 2018. [URL]
  86. J. Parham, C. Stewart, J. Crall, D. Rubenstein, J. Holmberg, and T. Berger-Wolf, "Focusing animal identification with annotations of interest," in Proceedings of the IEEE Winter Conference on Applications of Computer Vision, 2018.
  87. M. Leotta, E. Smith, and D. Russell, "TeleSculptor: Dense 3D Models from Uncalibrated FMV," in Proceedings of the MSS National Symposium on Passive Sensors, 2018.
  88. V. Arikatla, T. Nguyen, G. Blakey, R. White, Jr, A. Enquobahrie, and B. Paniagua, "Virtual reality osteotomy trainer for orthognathic surgery," in Submitted to 10th National Image-Guided Therapy Workshop, 2018.
  89. A. Hasan, E. Kolahdouz, A. Enquobahrie, T. Caranasos, J. Vavalle, and B. Griffith, "Image-based immersed boundary model of the aortic root," Medical Engineering & Physics, vol. 47, pp. 72-84, Sep. 2017. [URL]
  90. V. Sanchez, W. Kim, Y. Eom, K. Jin, M. Nam, D. Hwang, J. Kim, and B. Nam, "EclipseMR: Distributed and Parallel Task Processing with Consistent Hashing," in 2017 IEEE International Conference on Cluster Computing (CLUSTER), 2017. [URL]
  91. Z. Sun and A. Hoogs, "Compact image representation by binary component analysis," in Proceedings of the IEEE International Conference on Image Processing, 2017. [URL]
  92. E. Wengrowski, Z. Sun, and A. Hoogs, "Reflection correspondence for exposing photograph manipulation," in Proceedings of the IEEE International Conference on Image Processing, 2017. [URL]
  93. S. Dangi, H. Shah, A. Porras, B. Paniagua, C. Linte, M. Linguraru, and A. Enquobahrie, "Robust head CT image registration pipeline for craniosynostosis skull correction surgery," Healthcare Technology Letters, vol. 4, no. 5, pp. 174-178, Oct. 2017. [URL]
  94. C. Herz, J. Fillion-Robin, M. Onken, J. Riesmeier, A. Lasso, C. Pinter, G. Fichtinger, S. Pieper, D. Clunie, R. Kikinis, and A. Fedorov, "dcmqi : An Open Source Library for Standardized Communication of Quantitative Image Analysis Results Using DICOM," Cancer Research, vol. 77, no. 21, pp. e87-e90, Nov. 2017. [URL]
  95. J. van Griethuysen, A. Fedorov, C. Parmar, A. Hosny, N. Aucoin, V. Narayan, R. Beets-Tan, J. Fillion-Robin, S. Pieper, and H. Aerts, "Computational Radiomics System to Decode the Radiographic Phenotype," Cancer Research, vol. 77, no. 21, pp. e104-e107, Nov. 2017. [URL]
  96. D. Gutman, M. Khalilia, S. Lee, M. Nalisnik, Z. Mullen, J. Beezley, D. Chittajallu, D. Manthey, and L. Cooper, "The Digital Slide Archive: A Software Platform for Management, Integration, and Analysis of Histology for Cancer Research," Cancer Research, vol. 77, no. 21, pp. e75-e78, Nov. 2017. [URL]
  97. D. Qi, K. Panneerselvam, W. Ahn, V. Arikatla, A. Enquobahrie, and S. De, "Virtual interactive suturing for the Fundamentals of Laparoscopic Surgery (FLS)," Journal of Biomedical Informatics, vol. 75, pp. 48-62, Nov. 2017. [URL]
  98. R. Vetreno, R. Yaxley, B. Paniagua, G. Johnson, and F. Crews, "Adult rat cortical thickness changes across age and following adolescent intermittent ethanol treatment," Addiction Biology, vol. 22, no. 3, pp. 712-723, May 2017. [URL]
  99. S. Han, A. Fafard, J. Kerekes, M. Gartley, E. Ientilucci, A. Savakis, C. Law, J. Parhan, M. Turek, K. Fieldhouse, and T. Rovito, "Efficient generation of image chips for training deep learning algorithms," in SPIE Defense + Security, 2017. [URL]
  100. A. Porras, D. Zukić, A. Enquobahrie, R. Keating, G. Rogers, and M. Linguraru, "Personalized Optimal Planning of Fronto-Orbital Advancement Surgery for the Correction of Metopic Craniosynostosis from CT," in American Cleft Palate-Craniofacial Association's Annual Meeting, 2017.
  101. M. Dawkins, L. Sherrill, K. Fieldhouse, A. Hoogs, B. Richards, D. Zhang, L. Prasad, K. Williams, N. Lauffenburger, and G. Wang, "An open-source platform for underwater image and video analytics," in Proceedings of the IEEE Winter Conference on Applications of Computer Vision, 2017. Winner, Best Paper Honorable Mention. [URL]
  102. B. Paniagua, S. Kim, M. Moustapha, M. Styner, H. Cody-Hazlett, R. Gimple-Smith, A. Rumple, J. Piven, J. Gilmore, G. Skolnick, and K. Patel, "Brain structure in sagittal craniosynostosis," in SPIE Medical Imaging, 2017. [URL]
  103. B. Paniagua, L. Pascal, J. Prieto, J. Vimort, L. Gomes, M. Yatabe, A. Ruellas, F. Budin, S. Pieper, M. Styner, E. Benavides, and L. Cevidanes, "Diagnostic index: an open-source tool to classify TMJ OA condyles," in SPIE Medical Imaging, 2017. [URL]
  104. J. Prieto, B. Paniagua, M. Yatabe, A. Ruellas, L. Fattori, L. Muniz, M. Styner, and L. Cevidanes, "Federating heterogeneous datasets to enhance data sharing and experiment reproducibility," in SPIE Medical Imaging, 2017. [URL]
  105. L. Potter, S. Arikatla, A. Bray, J. Webb, and A. Enquobahrie, "Physiology informed virtual surgical planning: a case study with a virtual airway surgical planner and BioGears," in SPIE Medical Imaging, 2017. [URL]
  106. P. Tabrizi, H. Sang, H. Talari, D. Preciado, R. Monfaredi, B. Reilly, S. Arikatla, A. Enquobahrie, and K. Cleary, "Temporal bone dissection simulator for training pediatric otolaryngology surgeons," in SPIE Medical Imaging, 2017. [URL]
  107. C. Ahlbrecht, A. Ruellas, B. Paniagua, J. Schilling, J. McNamara, and L. Cevidanes, "Three-dimensional characterization of root morphology for maxillary incisors," PLOS ONE, vol. 12, no. 6, pp. e0178728, Jun. 2017. [URL]
  108. R. Zhang, D. Zukić, D. Byrd, A. Enquobahrie, A. Alessio, K. Cleary, and P. Kinahan, "A deformable registration workflow for motion correction in PET-CT guided biopsy," in Society of Nuclear Medicine and Molecular Imaging Annual Meeting, 2017.
  109. Y. Jiang, E. Padgett, M. Hanwell, C. Quammen, C. Harris, S. Waldon, D. Muller, and R. Hovden, "tomviz: Providing Advanced Electron Tomography by Streamlining Alignment, Reconstruction, and 3D Visualization," Microscopy and Microanalysis, vol. 23, no. S1, pp. 222-223, Jul. 2017. [URL]
  110. C. Long, E. Smith, A. Basharat, and A. Hoogs, "A C3D-based convolutional neural network for frame dropping detection in a single video shot," in Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition Workshop on Media Forensics, 2017. [URL]
  111. S. Gerber and M. Maggioni, "Multiscale Strategies for Computing Optimal Transport," Journal of Machine Learning Research, vol. 18, no. 1, pp. 2440-2471, Jan. 2017. [URL]
  112. M. M McCormick, M. L Palmeri, J. Fillion-Robin, and S. Aylward, "SlicerITKUltrasound: A 3D Slicer extension for scan conversion of B-mode and next-generation ultrasound imaging modalities," The Journal of Open Source Software, vol. 2, no. 10, pp. 153, Feb. 2017. [URL]
  113. M. Hanwell, W. de Jong, and C. Harris, "Open chemistry: RESTful web APIs, JSON, NWChem and the modern web application," Journal of Cheminformatics, vol. 9, no. 1, Dec. 2017. [URL]
  114. F. Ebrahim, A. Ruellas, B. Paniagua, E. Benavides, K. Jepsen, L. Wolford, J. Goncalves, and L. Cevidanes, "Accuracy of biomarkers obtained from cone beam computed tomography in assessing the internal trabecular structure of the mandibular condyle," Oral Surgery, Oral Medicine, Oral Pathology and Oral Radiology, vol. 124, no. 6, pp. 588-599, Dec. 2017. [URL]
  115. Z. Sun and A. Hoogs, "Object insertion and removal in images with mirror reflection," in Proceedings of the IEEE Workshop on Information Forensics and Security, 2017. [URL]
  116. M. Judson, A. Burette, C. Thaxton, A. Pribisko, M. Shen, A. Rumple, W. Del Cid, B. Paniagua, M. Styner, R. Weinberg, and B. Philpot, "Decreased Axon Caliber Underlies Loss of Fiber Tract Integrity, Disproportional Reductions in White Matter Volume, and Microcephaly in Angelman Syndrome Model Mice," The Journal of Neuroscience, vol. 37, no. 31, pp. 7347-7361, Aug. 2017. [URL]
  117. N. Malitsky, A. Chaudhary, S. Jourdain, M. Cowan, P. O’Leary, M. Hanwell, and K. Van Dam, "Building near-real-time processing pipelines with the spark-MPI platform," in Proceedgins of the New York Scientific Data Summit, 2017. [URL]
  118. D. Punzo, J. van der Hulst, J. Roerdink, J. Fillion-Robin, and L. Yu, "SlicerAstro: A 3-D interactive visual analytics tool for HI data," Astronomy and Computing, vol. 19, pp. 45-59, Apr. 2017. [URL]
  119. X. Han, X. Yang, S. Aylward, R. Kwitt, and M. Niethammer, "Efficient registration of pathological images: A joint PCA/image-reconstruction approach," in Proceedings of the IEEE International Symposium on Biomedical Imaging, 2017. [URL]
  120. K. Brady, B. Wu, S. Sim, A. Enquobahrie, R. Ortiz, and S. Arikatla, "Modeling Reduced User Experience Caused by Visual Latency," in Advances in Ergonomics Modeling, Usability & Special Populations. Springer International Publishing, 2017, pp. 267-277. [URL]
  121. S. Sim, B. Wu, K. Brady, A. Enquobahrie, R. Ortiz, and S. Arikatla, "Quantifying the Effects of Reduced Update Rate on Motor Performance and User Experience," in Advances in Ergonomics Modeling, Usability & Special Populations. Springer International Publishing, 2017, pp. 255-265. [URL]
  122. L. Tu, A. Porras, S. Ensel, D. Tsering, B. Paniagua, A. Enquobahrie, A. Oh, R. Keating, G. Rogers, and M. Linguraru, "Intracranial Volume Quantification from 3D Photography," in Computer Assisted and Robotic Endoscopy and Clinical Image-Based Procedures. Springer International Publishing, 2017, pp. 116-123. [URL]
  123. S. Gerber, M. Jallais, H. Greer, M. McCormick, S. Montgomery, B. Freeman, D. Kane, D. Chittajallu, N. Siekierski, and S. Aylward, "Automatic Estimation of the Optic Nerve Sheath Diameter from Ultrasound Images," in Imaging for Patient-Customized Simulations and Systems for Point-of-Care Ultrasound. Springer International Publishing, 2017, pp. 113-120. [URL]
  124. J. Vimort, M. McCormick, and B. Paniagua, "Computing Bone Morphometric Feature Maps from 3-Dimensional Images," Insight Journal, no. January-December 2017, 2017. [URL]
  125. J. Vimort, M. McCormick, F. Budin, and B. Paniagua, "Computing Textural Feature Maps for N-Dimensional images," Insight Journal, 2017. [URL]
  126. J. Crall, "Identifying Individual Animals using Ranking, Verification, and Connectivity," Ph.D. dissertation, Rensselaer Polytechnic Institute, 2017.
  127. F. Ebrahim, A. Ruellas, B. Paniagua, E. Benavides, J. Goncalves, L. Wolford, and L. Cevidanes, "CBCT Biomarkers That Can Accurately Assess Mandibular Condyle Trabecular Structure," in 017 IADR/AADR/CADR General Session (San Francisco, California), 2017. [URL]
  128. L. Gomes, L. Cevidanes, M. Gomes, A. Ruellas, D. Ryan, B. Paniagua, L. Wolford, and J. Goncalves, "Correlation Between Condylar Displacement and Remodeling Changes Following Orthognathic Surgery," in 2017 IADR/AADR/CADR General Session, 2017. [URL]
  129. N. Pentis, S. Pieper, V. Boen, L. Cevidanes, A. Ruellas, M. Yatabe, L. Macron, J. Lopinto, F. Budin, B. Paniagua, M. Styner, and J. Prieto, "Evaluating Dental and Craniofacial Bionetwork for Image Analysis's Dissemination Efforts," in 2017 IADR/AADR/CADR General Session, 2017. [URL]
  130. M. Yatabe, A. Ruellas, L. Gomes, L. Macron, J. Lopinto, B. Paniagua, F. Budin, and L. Cevidanes, "Comparative Study of Three Methods to Compute 3D Craniofacial Angular Measurements," in 2017 IADR/AADR/CADR General Session (San Francisco, California), 2017. [URL]
  131. J. Fishbaugh, B. Paniagua, V. Boen, L. Cevidanes, and G. Gerig, "Continuous 4D Shape Analysis of Mandibular Changes," in 2017 IADR/AADR/CADR General Session (San Francisco, California), 2017. [URL]
  132. J. Prieto, B. Paniagua, M. Yatabe, A. Ruellas, L. Fattori, L. Muniz, M. Styner, and L. Cevidanes, "Facilitating Experiment Reproducibility Through Data Federation and Image Processing Tools Integration," in 2017 IADR/AADR/CADR General Session (San Francisco, California), 2017. [URL]
  133. L. Cevidanes, E. Benavides, B. Paniagua, A. Ruellas, M. Yatabe, L. Gomes, J. Prieto, C. Huang, H. Zhu, M. Styner, and S. Allareddy, "Integrating Clinical and Imaging Markers of Temporomandibular Joint Arthritis," in 2017 IADR/AADR/CADR General Session (San Francisco, California), 2017. [URL]
  134. A. Ruellas, F. Copello, M. Yatabe, B. Paniagua, J. Maciel, O. Guariza, and L. Cevidanes, "Unilateral Crossbite Malocclusion: Assessment of Asymmetry," in 2017 IADR/AADR/CADR General Session (San Francisco, California), 2017. [URL]
  135. K. Fieldhouse, A. Hoogs, and E. Swears, "Linking Unmanned Systems, Visible and IR Video, Computer Vision, and Humans Together for Real-Time, Squad-Level, Battlefield Situational Awareness: THreat Reconnaissance and Exploitation from Audio-video Target eXtraction (THREAT X)," in AUVSI XPONENTIAL Conference, 2017.
  136. S. Dunbar, D. Baumbach, M. Wright, C. Hayes, J. Holmberg, J. Crall, and C. Stewart, "HotSpotter: less manipulating, more learning, and better vision for turtle photo identification," in Annual Symposium on Sea Turtle Biology and Conservation, 2017.
  137. A. Porras, B. Paniagua, A. Enquobahrie, S. Ensel, H. Shah, R. Keating, G. Rogers, and M. Linguraru, "Locally Affine Diffeomorphic Surface Registration for Planning of Metopic Craniosynostosis Surgery," in Medical Image Computing and Computer-Assisted Intervention, 2017. [URL]
  138. P. O'Leary, S. Jhaveri, A. Chaudhary, W. Sherman, K. Martin, A. Vacanti, E. Whiting, J. Money, and S. McKenzie, "Enhancements to VTK enabling scientific visualization in immersive environments," in Proceedings of the IEEE Virtual Reality Conference, 2017. [URL]
  139. J. Moeller, E. Smith, A. Basharat, M. Turek, A. Hoogs, and E. Blasch, "Automatic pattern of life learning in satellite images through graph kernels," in Proceedings of the MSS National Symposium on Sensor and Data Fusion, 2017.
  140. C. Law, J. Parham, M. Dawkins, P. Tunison, D. Stoup, R. Blue, K. Fieldhouse, M. Turek, A. Hoogs, S. Han, A. Farafard, J. Kerekes, E. Lentilucci, M. Gartley, T. Savakis, T. Rovito, S. Thomas, and C. Stansifer, "Deep learning for object detection and object-based change detection in satellite imagery," in Proceedings of the MSS National Symposium on Sensor and Data Fusion, 2017.
  141. K. Fieldhouse, A. Hoogs, and E. Swears, "Fusing Visible and Infrared (IR) Video on Mobile Robots, UAVs and Warfighters for Real-Time, Squad-Level Situational Awareness," in Proceedings of the MSS National Symposium on Sensor and Data Fusion, 2017.
  142. M. Dawkins, R. Collins, and A. Hoogs, "Using Convolutional Neural Networks for Content-Based FMV Retrieval," in Proceedings of the MSS National Symposium on Sensor and Data Fusion, 2017.
  143. D. Thompson, S. Jourdain, A. Bauer, B. Geveci, R. Maynard, R. Vatsavai, and P. O'Leary, "In Situ Summarization with VTK-m," in Proceedings of the Workshop on In Situ Infrastructures for Enabling Extreme-Scale Analysis and Visualization, 2017. [URL]
  144. M. Larsen, J. Ahrens, U. Ayachit, E. Brugger, H. Childs, B. Geveci, and C. Harrison, "The ALPINE In Situ Infrastructure: Ascending from the Ashes of Strawman," in Proceedings of the Workshop on In Situ Infrastructures for Enabling Extreme-Scale Analysis and Visualization, 2017. [URL]
  145. S. Birch, M. Lenox, J. Kornegay, B. Paniagua, M. Styner, C. Goodlett, T. Cudd, and S. Washburn, "Maternal choline supplementation in a sheep model of first trimester binge alcohol fails to protect against brain volume reductions in peripubertal lambs," Alcohol, vol. 55, pp. 1-8, Sep. 2016. [URL]
  146. S. Shelton, P. Dayton, S. Aylward, and F. Foster, "The application of acoustic angiography to assess the progression of angiogenesis in a spontaneous mouse model of breast cancer," in IEEE International Ultrasonics Symposium (IUS), 2016. [URL]
  147. T. Kapur, S. Pieper, A. Fedorov, J. Fillion-Robin, M. Halle, L. O'Donnell, A. Lasso, T. Ungi, C. Pinter, J. Finet, S. Pujol, J. Jagadeesan, J. Tokuda, I. Norton, R. Estepar, D. Gering, H. Aerts, M. Jakab, N. Hata, L. Ibanez, D. Blezek, J. Miller, S. Aylward, W. Grimson, G. Fichtinger, W. Wells, W. Lorensen, W. Schroeder, and R. Kikinis, "Increasing the impact of medical image computing using community-based open-access hackathons: The NA-MIC and 3D Slicer experience," Medical Image Analysis, vol. 33, pp. 176-180, Oct. 2016. [URL]
  148. A. Porras, D. Zukić, A. Equobahrie, G. Rogers, and M. Linguraru, "Personalized Optimal Planning for the Surgical Correction of Metopic Craniosynostosis," in MICCAI Workshop on Clinical Image-based Procedures, 2016.
  149. R. Porter, A. Basharat, R. Collins, M. Turek, and A. Hoogs, "Training and evaluating object detection pipelines with connected components," in Proceedings of the IEEE Applied Imagery Pattern Recognition Workshop, 2016. [URL]
  150. T. Nguyen, C. Phillips, and B. Paniagua, "The use of SPHARM-PDM and mean latitude axis to evaluate airway changes," The Angle Orthodontist, vol. 86, no. 6, pp. 943-948, Nov. 2016. [URL]
  151. U. Ayachit, A. Bauer, E. Duque, G. Eisenhauer, N. Ferrier, J. Gu, K. Jansen, B. Loring, Z. Lukic, S. Menon, D. Morozov, P. O'Leary, R. Ranjan, M. Rasquin, C. Stone, V. Vishwanath, G. Weber, B. Whitlock, M. Wolf, K. Wu, and E. Bethel, "Performance Analysis, Design Considerations, and Applications of Extreme-Scale In Situ Infrastructures," in International Conference for High Performance Computing, Networking, Storage and Analysis, 2016. [URL]
  152. U. Ayachit, B. Whitlock, M. Wolf, B. Loring, B. Geveci, A. Vacanti, and E. Bethel, "The SENSEI Generic In Situ Interface," in Proceedings of the Workshop on In Situ Infrastructures for Enabling Extreme-Scale Analysis and Visualization, 2016. [URL]
  153. C. Harris, P. O'Leary, M. Grauer, A. Chaudhary, C. Kotfila, and R. O'Bara, "Dynamic Provisioning and Execution of HPC Workflows Using Python," in Workshop on Python for High-Performance and Scientific Computing, 2016. [URL]
  154. K. Moreland, C. Sewell, W. Usher, L. Lo, J. Meredith, D. Pugmire, J. Kress, H. Schroots, K. Ma, H. Childs, M. Larsen, C. Chen, R. Maynard, and B. Geveci, "VTK-m: Accelerating the Visualization Toolkit for Massively Threaded Architectures," IEEE Computer Graphics and Applications, vol. 36, no. 3, pp. 48-58, May 2016. [URL]
  155. C. Zdanski, S. Davis, Y. Hong, D. Miao, C. Quammen, S. Mitran, B. Davis, M. Niethammer, J. Kimbell, E. Pitkin, J. Fine, L. Fordham, B. Vaughn, and R. Superfine, "Quantitative assessment of the upper airway in infants and children with subglottic stenosis," The Laryngoscope, vol. 126, no. 5, pp. 1225-1231, May 2016. [URL]
  156. S. Shelton, B. Lindsey, R. Gessner, Y. Lee, S. Aylward, H. Lee, E. Cherin, F. Foster, and P. Dayton, "Acoustic angiography: a new high frequency contrast ultrasound technique for biomedical imaging," in SPIE Commercial + Scientific Sensing and Imaging, 2016. [URL]
  157. T. Morrison, D. Keinath, W. Estes-Zumpf, J. Crall, and C. Stewart, "Individual Identification of the Endangered Wyoming Toad Anaxyrus baxteri and Implications for Monitoring Species Recovery," Journal of Herpetology, vol. 50, no. 1, pp. 44-49, Mar. 2016. [URL]
  158. S. Oh, M. Pandey, I. Kim, and A. Hoogs, "Image-oriented economic perspective on user behavior in multimedia social forums: An analysis on supply, consumption, and saliency," Pattern Recognition Letters, vol. 72, pp. 33-40, Mar. 2016. [URL]
  159. M. Leotta, E. Smith, M. Dawkins, and P. Tunison, "Open source structure-from-motion for aerial video," in Proceedings of the IEEE Winter Conference on Applications of Computer Vision, 2016. [URL]
  160. A. Bauer, H. Abbasi, J. Ahrens, H. Childs, B. Geveci, S. Klasky, K. Moreland, P. O'Leary, V. Vishwanath, B. Whitlock, and E. Bethel, "In Situ Methods, Infrastructures, and Applications on High Performance Computing Platforms," Computer Graphics Forum, vol. 35, no. 3, pp. 577-597, Jun. 2016. [URL]
  161. D. Zukić, Z. Mullen, D. Byrd, P. Kinahan, and A. Enquobahrie, "A web-based platform for a high throughput calibration of PET scans," in Proceedings of the International Congress and Exhibition on Computer Assisted Radiology and Surgery, 2016. [URL]
  162. M. Dawkins, A. Basharat, J. Becker, M. Turek, and A. Hoogs, "Deep architecture for small mover detection in overhead infrared imagery," in Proceedings of the MSS National Symposium on Sensor and Data Fusion, 2016.
  163. P. Tunison, M. Turek, and A. Hoogs, "Functional scene element modeling for ISR data," in Proceedings of the MSS National Symposium on Sensor and Data Fusion, 2016.
  164. R. Vetreno, R. Yaxley, B. Paniagua, and F. Crews, "Diffusion tensor imaging reveals adolescent binge ethanol-induced brain structural integrity alterations in adult rats that correlate with behavioral dysfunction," Addiction Biology, vol. 21, no. 4, pp. 939-953, Jul. 2016. [URL]
  165. L. Avila and M. Bailey, "Art in the digital age," IEEE Computer Graphics and Applications, vol. 36, no. 4, pp. 6-7, Jul. 2016. [URL]
  166. I. Oguz, J. Cates, M. Datar, B. Paniagua, T. Fletcher, C. Vachet, M. Styner, and R. Whitaker, "Entropy-based particle correspondence for shape populations," International Journal of Computer Assisted Radiology and Surgery, vol. 11, no. 7, pp. 1221-1232, Jul. 2016. [URL]
  167. Y. Jiang, M. Hanwell, E. Padgett, S. Waldon, D. Muller, and R. Hovden, "Advanced Platform for 3D Visualization, Reconstruction, and Segmentation with Electron Tomography," Microscopy and Microanalysis, vol. 22, no. S3, pp. 2070-2071, Jul. 2016. [URL]
  168. L. Avila and M. Bailey, "Augment your reality," IEEE Computer Graphics and Applications, vol. 36, no. 1, pp. 6-7, Jan. 2016. [URL]
  169. L. Gomes, M. Gomes, J. Gonçalves, A. Ruellas, L. Wolford, B. Paniagua, E. Benavides, and L. Cevidanes, "Cone beam computed tomography-based models versus multislice spiral computed tomography-based models for assessing condylar morphology," Oral Surgery, Oral Medicine, Oral Pathology and Oral Radiology, vol. 121, no. 1, pp. 96-105, Jan. 2016. [URL]
  170. Z. Falls, A. Vacanti, P. Avery, A. Shamp, and E. Zurek, "XtalOpt version r9: An open-source evolutionary algorithm for crystal structure prediction," Computer Physics Communications, vol. 199, pp. 178-179, Feb. 2016. [URL]
  171. K. Palaniappan, M. Poostchi, H. Aliakbarpour, R. Viguier, J. Fraser, F. Bunyak, A. Basharat, S. Suddarth, E. Blasch, R. Rao, and G. Seetharaman, "Moving object detection for vehicle tracking in Wide Area Motion Imagery using 4D filtering," in 2016 23rd International Conference on Pattern Recognition (ICPR), 2016. [URL]
  172. Z. Sun, J. Baumes, P. Tunison, M. Turek, and A. Hoogs, "Tattoo detection and localization using region-based deep learning," in Proceedings of the IEEE International Conference on Pattern Recognition, 2016. [URL]
  173. T. Berger-Wolf, J. Crall, J. Holberg, J. Parham, C. Stewart, B. Mackey, P. Kahumbu, and D. Rubenstein, "The Great Grevy’s Rally: The Need, Methods, Findings, Implications and Next Steps," Grevy's Zebra Trust, Aug. 2016. [URL]
  174. S. Aylward, M. McCormick, H. Kang, S. Razzaque, R. Kwitt, and M. Niethammer, "Ultrasound spectroscopy," in Proceedings of the IEEE International Symposium on Biomedical Imaging, 2016. [URL]
  175. V. Arikatla, R. Ortiz, S. De, and A. Enquobahrie, "A Unified Framework for Haptic Interaction in Multimodal Virtual Environments," Studies in Health Technology and Informatics, vol. 220, pp. 19-24, 2016.
  176. V. Arikatla, R. Ortiz, T. Halic, S. Radigan, D. Thompson, S. De, and A. Enquobahrie, "An Approach for Automated Scene Management in Real-Time Medical Simulation Framework," Studies in Health Technology and Informatics, vol. 220, pp. 25-28, 2016.
  177. C. Quammen, R. Taylor, P. Krajcevski, S. Mitran, A. Enquobahrie, R. Superfine, B. Davis, S. Davis, and C. Zdanski, "The Virtual Pediatric Airways Workbench," Studies in Health Technology and Informatics, vol. 220, pp. 295-300, 2016.
  178. D. Zukić, M. McCormick, G. Gerig, and P. Yushkevich, "RLEImage: run-length encoded memory compression scheme for an itk::Image," The Insight Journal, 2016. [URL]
  179. D. Zukić, J. Vicory, M. McCormick, L. Wisse, G. Gerig, P. Yushkevich, and S. Aylward, "nD morphological contour interpolation," The Insight Journal, 2016. [URL]
  180. B. Paniagua, A. Ruellas, M. Yatabe, L. Gomes, M. Styner, S. Pizer, and L. Cevidanes, "Computer Assisted subclinical classification of TMJ OA," in 2016 AADR/CADR Annual Meeting (Los Angeles, California), 2016. [URL]
  181. B. Lessley, R. Binyahib, R. Maynard, and H. Childs, "External Facelist Calculation with Data-Parallel Primitives," in Proceedings of the Eurographics Symposium on Parallel Graphics and Visualization, 2016. [URL]
  182. X. Yang, X. Han, E. Park, S. Aylward, R. Kwitt, and M. Niethammer, "Registration of Pathological Images," in Proceedings of the International Workshop on Simulation and Synthesis in Medical Imaging, 2016. [URL]
  183. M. Dawkins, Z. Sun, J. Becker, A. Basharat, A. Hoogs, and M. Turek, "Track Object Type Classification Across a Range of Scales and Types of Video," in Proceedings of the MSS National Symposium on Sensor and Data Fusion, 2016.
  184. M. Hanwell, K. Martin, A. Chaudhary, and L. Avila, "The Visualization Toolkit (VTK): Rewriting the rendering code for modern graphics cards," SoftwareX, vol. 1-2, pp. 9-12, Sep. 2015. [URL]
  185. B. Wood, D. Zukić, J. Qi, C. Meyer, R. Ortiz, C. Mendoza, A. Enquobahrie, M. Linguraru, and G. Rogers, "Evaluation of Fronto-Orbital Advancement for Coronal Synostosis using a 3D Statistical Shape Model," in Proceedings of the Congress of International Society of Craniofacial Surgery, 2015.
  186. M. Turek, A. Basharat, K. Fieldhouse, P. Tunison, D. Stoup, C. Atkins, and A. Hoogs, "Real-time, full-frame wide area motion imagery analytics," in Proceedings of the MSS National Symposium on Passive Sensors, 2015.
  187. J. Olasky, G. Sankaranarayanan, N. Seymour, J. Magee, A. Enquobahrie, M. Lin, R. Aggarwal, L. Brunt, S. Schwaitzberg, C. Cao, S. De, and D. Jones, "Identifying Opportunities for Virtual Reality Simulation in Surgical Education: A Review of the Proceedings from the Innovation, Design, and Emerging Alliances in Surgery (IDEAS) Conference: VR Surgery," Surgical Innovation, vol. 22, no. 5, pp. 514-521, Oct. 2015. [URL]
  188. B. Paniagua, D. Zukić, R. Ortiz, S. Aylward, B. Golden, T. Nguyen, and A. Enquobahrie, "Ultrasound-Guided Navigation System for Orthognathic Surgery," in MICCAI Workshop on Augmented Environments for Computer-Assisted Interventions, 2015. [URL]
  189. W. Schroeder, R. Maynard, and B. Geveci, "Flying edges: A high-performance scalable isocontouring algorithm," in Proceedings of the IEEE Symposium on Large Data Analysis and Visualization, 2015. [URL]
  190. V. Arikatla and S. De, "An iterative predictor–corrector approach for modeling static and kinetic friction in interactive simulations," Graphical Models, vol. 82, pp. 29-42, Nov. 2015. [URL]
  191. P. O'Leary, M. Christon, S. Jourdain, C. Harris, M. Berndt, and A. Bauer, "HPCCloud: A Cloud/Web-Based Simulation Environment," in IEEE International Conference on Cloud Computing Technology and Science, 2015. [URL]
  192. L. Avila and M. Bailey, "High Tech @ Home," IEEE Computer Graphics and Applications, vol. 35, no. 3, pp. 8-9, May 2015. [URL]
  193. B. Wu, S. Sim, A. Enquobahrie, and R. Ortiz, "Effects of visual latency on visual-haptic experience of stiffness," in International Workshop on Quality of Multimedia Experience, 2015. [URL]
  194. D. Lipsa, R. Roberts, and R. Laramee, "FoamVis, A Visualization System for Foam Research: Design and Implementation," Computers, vol. 4, no. 1, pp. 39-60, Mar. 2015. [URL]
  195. L. Avila and M. Bailey, "The Wearable Revolution," IEEE Computer Graphics and Applications, vol. 35, no. 2, pp. 104-104, Mar. 2015. [URL]
  196. S. Sua, A. Chaudhary, P. O’Leary, B. Geveci, W. Sherman, H. Nieto, and L. Francisco-Revilla, "Virtual reality enabled scientific visualization workflow," in IEEE Workshop on Everyday Virtual Reality, 2015. [URL]
  197. J. Qi, D. Zukić, B. Wood, G. Rogers, C. Meyer, R. Ortiz, C. Mendoza, A. Enquobahrie, and M. Linguraru, "Postoperative Evaluation of Craniosynostosis based on 3D Statistical Shape Model," in Proceedings of the International Congress and Exhibition on Computer Assisted Radiology and Surgery, 2015.
  198. D. Zukić, J. Finet, E. Wilson, F. Banovac, G. Esposito, K. Cleary, and A. Enquobahrie, "SlicerPET: A workflow based software module for PET/CT guided needle biopsy," in Proceedings of the International Congress and Exhibition on Computer Assisted Radiology and Surgery, 2015. [URL]
  199. R. Ortiz, D. Zukić, J. Qi, B. Wood, G. Rogers, A. Enquobahrie, and M. Linguraru, "Stress Analysis Of Cranial Bones For Craniosynostosis Surgical Correction," in Proceedings of the International Congress and Exhibition on Computer Assisted Radiology and Surgery, 2015.
  200. D. Rubenstein, C. Stewart, T. Berger-Wolf, J. Parham, J. Crall, C. Machogu, P. Kahumbu, and N. Maingi, "The Great Zebra and Giraffe Count: The Power and Rewards of Citizen Science," Kenya Wildlife Service, Jul. 2015. [URL]
  201. S. Shelton, Y. Lee, M. Lee, E. Cherin, F. Foster, S. Aylward, and P. Dayton, "Quantification of Microvascular Tortuosity during Tumor Evolution Using Acoustic Angiography," Ultrasound in Medicine & Biology, vol. 41, no. 7, pp. 1896-1904, Jul. 2015. [URL]
  202. F. Drakopoulos, R. Ortiz, A. Enquobahrie, and N. Chrisochoides, "Image-to-Mesh Conversion for Arteriovenous Malformation Surgical Simulators," in National Congress on Computational Mechanics, 2015.
  203. L. Avila and M. Bailey, "Advanced Display Technologies," IEEE Computer Graphics and Applications, vol. 35, no. 1, pp. 96-96, Jan. 2015. [URL]
  204. L. Encarnacao, Y. Chuang, A. Stork, D. Kasik, T. Rhyne, L. Avila, J. Kohlhammer, L. Encarnacao, J. LaViola, M. Tory, J. Dill, G. Domik, G. Owen, and P. Wong, "Future Directions in Computer Graphics and Visualization: From CG&A's Editorial Board," IEEE Computer Graphics and Applications, vol. 35, no. 1, pp. 20-32, Jan. 2015. [URL]
  205. L. Hagen, O. Uzuner, C. Kotfila, T. Harrison, and D. Lamanna, "Understanding citizens' direct policy suggestions to the federal government: a natural language processing and topic modeling approach," in Hawaii International Conference on System Sciences, 2015. [URL]
  206. A. Bauer, B. Geveci, and W. Schroeder, "The Catalyst User's Guide v2.0," Kitware, Inc., Feb. 2015.
  207. C. Dumas, D. LaManna, T. Harrison, S. Ravi, C. Kotfila, N. Gervais, L. Hagen, and F. Chen, "Examining political mobilization of online communities through e-petitioning behavior in We the People," Big Data & Society, vol. 2, no. 2, pp. 205395171559817, Dec. 2015. [URL]
  208. X. Liu, M. Niethammer, R. Kwitt, N. Singh, M. McCormick, and S. Aylward, "Low-Rank Atlas Image Analyses in the Presence of Pathologies," IEEE Transactions on Medical Imaging, vol. 34, no. 12, pp. 2583-2591, Dec. 2015. [URL]
  209. S. Dargar, R. Kennedy, W. Lai, V. Arikatla, and S. De, "Towards immersive virtual reality (iVR): a route to surgical expertise," Journal of Computational Surgery, vol. 2, no. 1, Dec. 2015. [URL]
  210. R. Hovden, M. Hanwell, U. Ayachit, Y. Jiang, R. Maynard, and D. Muller, "Repeatable and Transferable Processing for Electron Tomography: An Open Platform for Visualization and Reconstruction of 3D Materials," Microscopy and Microanalysis, vol. 21, no. S3, pp. 2407-2408, Aug. 2015. [URL]
  211. D. Zukić, "An Efficient Inflation Method for Segmentation of Medical 3D Images," Ph.D. dissertation, University of Siegen, 2015. [URL]
  212. A. Hoogs, A. Perera, R. Collins, A. Basharat, K. Fieldhouse, C. Atkins, L. Sherrill, B. Boeckel, R. Blue, M. Woehlke, C. Greco, Z. Sun, E. Swears, N. Cuntoor, J. Luck, B. Drew, D. Hanson, D. Rowley, J. Kopaz, T. Rude, D. Keefe, A. Srivastava, S. Khanwalkar, A. Kumar, C. Chen, J. Aggarwal, L. Davis, Y. Yacoob, A. Jain, D. Liu, S. Chang, B. Song, A. Roy-Chowdhury, K. Sullivan, J. Tesic, S. Chandrasekaran, B. Manjunath, X. Wang, Q. Ji, K. Reddy, J. Liu, M. Shah, K. Chang, T. Chen, and M. Desai, "An end-to-end system for content-based video retrieval using behavior, actions, and appearance with interactive query refinement," in Proceedings of the IEEE Conference on Advanced Video and Signal Based Surveillance, 2015. [URL]
  213. K. Martin and B. Hoffman, Mastering CMake: a cross-platform build system. Kitware Inc, 2015.
  214. F. Drakopoulos, R. Ortiz, A. Enquobahrie, D. Sasaki-Adams, and N. Chrisochoides, "Tetrahedral Image-to-Mesh Conversion Software for Anatomic Modeling of Arteriovenous Malformations," Procedia Engineering, vol. 124, pp. 278-290, 2015. [URL]
  215. V. Arikatla, R. Ortiz, D. Thompson, D. Sasaki-Adams, A. Enquobahrie, and S. De, "A hybrid approach to simulate tissue behavior during surgical simulation," in International Conference on Computational & Mathematical Biomedical Engineering, 2015.
  216. L. Hagen, T. Harrison, Ö. Uzuner, T. Fake, D. Lamanna, and C. Kotfila, "Introducing textual analysis tools for policy informatics: a case study of e-petitions," in Proceedings of the International Conference on Digital Government Research, 2015. [URL]
  217. M. Leotta, P. Tunison, E. Smith, and M. Dawkins, "MAP-Tk: Motion imagery Aerial Photogrammetry Toolkit," in Proceedings of the MSS National Symposium on Passive Sensors, 2015.
  218. L. He, R. Ortiz, A. Enquobahrie, and D. Manocha, "Interactive continuous collision detection for topology changing models using dynamic clustering," in Proceedings of the Symposium on Interactive 3D Graphics and Games, 2015. [URL]
  219. U. Ayachit, A. Bauer, B. Geveci, P. O'Leary, K. Moreland, N. Fabian, and J. Mauldin, "ParaView Catalyst: Enabling In Situ Data Analysis and Visualization," in Proceedings of the Workshop on In Situ Infrastructures for Enabling Extreme-Scale Analysis and Visualization, 2015. [URL]
  220. R. Jain, J. Becker, V. Mahadevan, P. Shriwise, R. O’Bara, and I. Grindeanu, "OCC-based meshing for RGG applications using MeshKit," in SIAM Conference on Computational Science and Engineering, 2015.
  221. L. Avila and M. Bailey, "Virtual Reality for the Masses," IEEE Computer Graphics and Applications, vol. 34, no. 5, pp. 103-104, Sep. 2014. [URL]
  222. S. Jhaveri, A. Chaudhary, and L. Avila, "Volume rendering improvements in VTK," Kitware Source, no. 31, Oct. 2014.
  223. K. Fieldhouse, M. Leotta, A. Basharat, R. Blue, D. Stoup, C. Atkins, L. Sherrill, B. Boeckel, P. Tunison, J. Becker, M. Dawkins, M. Woehlke, R. Collins, M. Turek, and A. Hoogs, "KWIVER: An open source cross-platform video exploitation framework," in Proceedings of the IEEE Applied Imagery Pattern Recognition Workshop, 2014. [URL]
  224. E. Swears, A. Basharat, A. Hoogs, and E. Blasch, "Probabilistic sub-GRAph Matching (PGRAM) for video and text fusion," in Proceedings of the MSS National Symposium on Sensor and Data Fusion, 2014.
  225. J. Ahrens, S. Jourdain, P. OLeary, J. Patchett, D. Rogers, and M. Petersen, "An Image-Based Approach to Extreme Scale in Situ Visualization and Analysis," in International Conference for High Performance Computing, Networking, Storage and Analysis, 2014. [URL]
  226. Y. Hong, B. Davis, J. Marron, R. Kwitt, N. Singh, J. Kimbell, E. Pitkin, R. Superfine, S. Davis, C. Zdanski, and M. Niethammer, "Statistical atlas construction via weighted functional boxplots," Medical Image Analysis, vol. 18, no. 4, pp. 684-698, May 2014. [URL]
  227. A. Basharat, M. Turek, Y. Xu, C. Atkins, D. Stoup, K. Fieldhouse, P. Tunison, and A. Hoogs, "Real-time multi-target tracking at 210 megapixels/second in Wide Area Motion Imagery," in Proceedings of the IEEE Winter Conference on Applications of Computer Vision, 2014. [URL]
  228. L. Torres, H. Azimian, and A. Enquobahrie, "A user-friendly automated port placement planning system for laparoscopic robotic surgery," in SPIE Medical Imaging, 2014. [URL]
  229. R. Kwitt, S. Razzaque, J. Lowell, and S. Aylward, "Variability sensitivity of dynamic texture based recognition in clinical CT data," in SPIE Medical Imaging, 2014. [URL]
  230. H. Karimabadi, V. Roytershteyn, H. Vu, Y. Omelchenko, J. Scudder, W. Daughton, A. Dimmock, K. Nykyri, M. Wan, D. Sibeck, M. Tatineni, A. Majumdar, B. Loring, and B. Geveci, "The link between shocks, turbulence, and magnetic reconnection in collisionless plasmas," Physics of Plasmas, vol. 21, no. 6, pp. 062308, Jun. 2014. [URL]
  231. E. Swears, A. Hoogs, Q. Ji, and K. Boyer, "Complex Activity Recognition Using Granger Constrained DBN (GCDBN) in Sports and Surveillance Video," in Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition, 2014. [URL]
  232. E. Swears, A. Hoogs, and K. Boyer, "Pyramid Coding for Functional Scene Element Recognition in Video Scenes," in Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition Workshops, 2014.
  233. M. Dawkins, Z. Sun, A. Basharat, A. Perera, and A. Hoogs, "Tracking nautical objects in real-time via layered saliency detection," in SPIE Defense, Security, and Sensing Motion Imagery for ISR and Situational Awareness, 2014. [URL]
  234. D. Katz, S. Choi, H. Lapp, K. Maheshwari, F. Loffler, M. Turk, M. Hanwell, N. Wilkins-Diehr, J. Hetherington, J. Howison, S. Swenson, G. Allen, A. Elster, B. Berriman, and C. Venters, "Summary of the First Workshop on Sustainable Software for Science: Practice and Experiences (WSSSPE1)," Journal of Open Research Software, vol. 2, no. 1, pp. e6, Jul. 2014. [URL]
  235. E. Blasch, J. Nagy, A. Aved, E. Jones, W. Pottenger, A. Basharat, A. Hoogs, M. Schneider, R. Hammoud, G. Chen, D. Shen, and H. Ling, "Context aided video-to-text information fusion," in International Conference on Information Fusion, 2014.
  236. Z. Sun, M. Leotta, A. Hoogs, R. Blue, R. Neuroth, J. Vasquez, A. Perera, M. Turek, and E. Blasch, "Vehicle change detection from aerial imagery using detection response maps," in SPIE Defense, Security, and Sensing Motion Imagery for ISR and Situational Awareness, 2014. [URL]
  237. J. Bischoff, Y. Dai, C. Goodlett, B. Davis, and M. Bandi, "Incorporating population-level variability in orthopedic biomechanical analysis: a review," Journal of Biomechanical Engineering, vol. 136, no. 2, pp. 021004, Feb. 2014. [URL]
  238. Y. Xu, A. Basharat, J. Becker, and A. Hoogs, "Complex algorithm optimization through probabilistic search of its configuration tree," in Proceedings of the IEEE Conference on Advanced Video and Signal Based Surveillance, 2014. [URL]
  239. M. Dawkins, A. Perera, and A. Hoogs, "Real-time heads-up display detection in video," in Proceedings of the IEEE Conference on Advanced Video and Signal Based Surveillance, 2014. [URL]
  240. S. Oh, M. Pandey, I. Kim, A. Hoogs, and J. Baumes, "Personalized Economy of Images in Social Forums: An Analysis on Supply, Consumption, and Saliency," in Proceedings of the IEEE International Conference on Pattern Recognition, 2014. Winner, Best Industry-Related Paper Award. [URL]
  241. L. Ibanez, W. Schroeder, and M. Hanwell, "Practicing Open Science," in Implementing Reproducible Research. Chapman and Hall/CRC, 2014.
  242. J. Finet, R. Ortiz, J. Andruejol, A. Enquobahrie, J. Jomier, J. Payne, and S. Aylward, "Bender: An Open Source Software for Efficient Model Posing and Morphing," in Biomedical Simulation. Springer International Publishing, 2014, pp. 203-210. [URL]
  243. D. Zukić, A. Vlasák, J. Egger, D. Hořínek, C. Nimsky, and A. Kolb, "Robust Detection and Segmentation for Diagnosis of Vertebral Diseases using Routine MR Images," Computer Graphics Forum, vol. 33, no. 6, pp. 190-204, 2014. [URL]
  244. Y. Liu, A. Kot, F. Drakopoulos, C. Yao, A. Fedorov, A. Enquobahrie, O. Clatz, and N. Chrisochoides, "An ITK implementation of a physics-based non-rigid registration method for brain deformation in image-guided neurosurgery," Frontiers in Neuroinformatics, vol. 8, pp. 33, 2014. [URL]
  245. M. McCormick, X. Liu, J. Jomier, C. Marion, and L. Ibanez, "ITK: enabling reproducible research and open science," Frontiers in Neuroinformatics, vol. 8, 2014. [URL]
  246. L. Avila and M. Bailey, "From real to digital, and vice versa," IEEE Computer Graphics and Applications, vol. 34, no. 4, pp. 80-c3, 2014.
  247. A. Chaudhary, C. Goodlett, and D. Thompson, "Transitions tutorial for KiwiViewer and VES," Kitware Source, no. 28, 2014.
  248. M. Hanwell, A. Chaudhary, J. Baumes, and B. Geveci, "VTK's second Google Summer of Code," Kitware Source, no. 31, 2014.
  249. J. Levine, D. Thompson, J. Bennett, P. Bremer, A. Gyulassy, V. Pascucci, and P. Pébay, "Analysis of Uncertain Scalar Data with Hixels," in Scientific Visualization. Springer London, 2014, pp. 35-44. [URL]
  250. D. Lipsa, R. Laramee, S. Cox, and I. Davies, "Comparative Visualization and Analysis of Time-Dependent, 2D Foam Simulation Data," in Computer Graphics and Visual Computing, 2014. [URL]
  251. J. Snape, S. Guy, J. van den Berg, and D. Manocha, "Smooth Coordination and Navigation for Multiple Differential-Drive Robots," in Internation Symposium on Experimental Robotics, 2014. [URL]
  252. Y. Xu, D. Song, and A. Hoogs, "An Efficient Online Hierarchical Supervoxel Segmentation Algorithm for Time-critical Applications," in Proceedings of the British Machine Vision Conference, 2014. [URL]
  253. Y. Hong, R. Kwitt, N. Singh, B. Davis, N. Vasconcelos, and M. Niethammer, "Geodesic Regression on the Grassmannian," in Proceedings of the European Conference on Computer Vision, 2014. [URL]
  254. X. Liu, M. Niethammer, R. Kwitt, M. McCormick, and S. Aylward, "Low-Rank to the Rescue – Atlas-Based Analyses in the Presence of Pathologies," in Proceedings of the Internation Conference on Medical Image Computing and Computer Assisted Intervention, 2014. [URL]
  255. K. Cleary, R. Khare, A. Enquobahrie, P. Kinahan, G. Esposito, and F. Banovac, "Evaluation of a method using low-radiation dose amplitude gated phase matched PET-CT images for guided liver biopsy," in Proceedings of the International Congress and Exhibition on Computer Assisted Radiology and Surgery, 2014.
  256. M. Dawkins and A. Hoogs, "Automatic image-plane aligned obstruction detection in EO and IR video," in Proceedings of the MSS National Symposium on Passive Sensors, 2014.
  257. M. Hanwell, P. O'Leary, and B. O'Bara, "Sustainable Software Ecosystems: Software Engineers, Domain Scientists, and Engineers Collaborating for Science," in Working Towards Sustainable Software for Science: Practice and Experiences, 2014. [URL]
  258. S. Jourdain, S. Wittenburg, and P. O'Leary, "Python enabled ParaViewWeb for HPC analysis and visualization," in Workshop on Python for High-Performance and Scientific Computing, 2014.
  259. U. Ayachit and B. Geveci, "Scientific data analysis and visualization at scale in VTK/ParaView with NumPy," in Workshop on Python for High-Performance and Scientific Computing, 2014.
  260. D. Williams, T. Bremer, C. Doutriaux, J. Patchett, S. Williams, G. Shipman, R. Miller, D. Pugmire, B. Smith, C. Steed, E. Bethel, H. Childs, H. Krishnan, P. Prabhat, M. Wehner, C. Silva, E. Santos, D. Koop, T. Ellqvist, J. Poco, B. Geveci, A. Chaudhary, A. Bauer, A. Pletzer, D. Kindig, G. Potter, and T. Maxwell, "Ultrascale visualization of climate data," Computer, vol. 46, no. 9, pp. 68-76, Sep. 2013. [URL]
  261. J. Haase, P. Mishra, A. Stephens, R. Haggerty, C. Quammen, R. Taylor, E. Yeh, M. Basrai, and K. Bloom, "A 3D Map of the Yeast Kinetochore Reveals the Presence of Core and Accessory Centromere-Specific Histone," Current Biology, vol. 23, no. 19, pp. 1939-1944, Oct. 2013. [URL]
  262. I. Csapo, B. Davis, Y. Shi, M. Sanchez, M. Styner, and M. Niethammer, "Longitudinal image registration with temporally-dependent image similarity measure," IEEE Transactions on Medical Imaging, vol. 32, no. 10, pp. 1939-1951, Oct. 2013. [URL]
  263. Y. Zhang, Y. Zhang, E. Swears, N. Larios, Z. Wang, and Q. Ji, "Modeling Temporal Interactions with Interval Temporal Bayesian Networks for Complex Activity Recognition," IEEE Transactions on Pattern Analysis and Machine Intelligence, vol. 35, no. 10, pp. 2468-2483, Oct. 2013. [URL]
  264. R. Kwitt, N. Vasconcelos, S. Razzaque, and S. Aylward, "Localizing target structures in ultrasound video – A phantom study," Medical Image Analysis, vol. 17, no. 7, pp. 712-722, Oct. 2013. [URL]
  265. D. Thompson, J. Bennett, C. Seshadhri, and A. Pinar, "A provably-robust sampling method for generating colormaps of large data," in 2013 IEEE Symposium on Large-Scale Data Analysis and Visualization (LDAV), 2013. [URL]
  266. R. Khare, G. Sala, P. Kinahan, G. Esposito, F. Banovac, K. Cleary, and A. Enquobahrie, "Experimental evaluation of a deformable registration algorithm for motion correction in PET-CT guided biopsy," in IEEE Nuclear Science Symposium and Medical Imaging Conference, 2013. [URL]
  267. D. Pace, S. Aylward, and M. Niethammer, "A Locally Adaptive Regularization Based on Anisotropic Diffusion for Deformable Image Registration of Sliding Organs," IEEE Transactions on Medical Imaging, vol. 32, no. 11, pp. 2114-2126, Nov. 2013. [URL]
  268. H. Childs, B. Geveci, W. Schroeder, J. Meredith, K. Moreland, C. Sewell, T. Kuhlen, and E. Bethel, "Research Challenges for Visualization Software," Computer, vol. 46, no. 5, pp. 34-42, May 2013. [URL]
  269. F. Porikli, F. Bremond, S. Dockstader, J. Ferryman, A. Hoogs, B. Lovell, S. Pankanti, B. Rinner, P. Tu, and P. Venetianer, "Video surveillance: past, present, and now the future [DSP Forum]," IEEE Signal Processing Magazine, vol. 30, no. 3, pp. 190-198, May 2013. [URL]
  270. A. Stephens, R. Haggerty, P. Vasquez, L. Vicci, C. Snider, F. Shi, C. Quammen, C. Mullins, J. Haase, R. Taylor, J. Verdaasdonk, M. Falvo, Y. Jin, M. Forest, and K. Bloom, "Pericentric chromatin loops function as a nonlinear spring in mitotic force balance," The Journal of Cell Biology, vol. 200, no. 6, pp. 757-772, Mar. 2013. [URL]
  271. B. Paniagua, O. Emodi, J. Hill, J. Fishbaugh, L. Pimenta, S. Aylward, A. Enquobahrie, G. Gerig, J. Gilmore, J. van Aalst, and M. Styner, "3D of brain shape and volume after cranial vault remodeling surgery for craniosynostosis correction in infants," in SPIE Medical Imaging, 2013. [URL]
  272. V. Revanna Shivaprabhu, A. Enquobahrie, Z. Mullen, and S. Aylward, "Accelerating ultrasound image analysis research through publically available database," in SPIE Medical Imaging, 2013. [URL]
  273. A. Enquobahrie, V. Shivaprabhu, S. Aylward, J. Finet, K. Cleary, and R. Alterovitz, "Patient-specific port placement for laparoscopic surgery using atlas-based registration," in SPIE Medical Imaging, 2013. [URL]
  274. E. Swears, A. Hoogs, and R. Blue, "Recognizing Activity Based Scene Elements in Video," in Automatic Target Recognition Working Group, 2013.
  275. Y. Xu, S. Oh, and A. Hoogs, "A Minimum Error Vanishing Point Detection Approach for Uncalibrated Monocular Images of Man-Made Environments," in Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition, 2013. [URL]
  276. A. Vaccarella, E. De Momi, A. Enquobahrie, and G. Ferrigno, "Unscented Kalman Filter Based Sensor Fusion for Robust Optical and Electromagnetic Tracking in Surgical Navigation," IEEE Transactions on Instrumentation and Measurement, vol. 62, no. 7, pp. 2067-2081, Jul. 2013. [URL]
  277. L. Ibanez, X. Liu, and M. McCormick, "ITK Bar Camp: Growing the ITK Community," Kitware Source, no. 24, Jan. 2013.
  278. M. McCormick, "New infrastructure for easy multi-threading in itkv4," Kitware Source, no. 24, Jan. 2013.
  279. J. Crall, C. Stewart, T. Berger-Wolf, D. Rubenstein, and S. Sundaresan, "HotSpotter–Patterned species instance recognition," in Proceedings of the IEEE Workshop on Applications of Computer Vision, 2013. [URL]
  280. R. Maynard, K. Moreland, U. Atyachit, B. Geveci, and K. Ma, "Optimizing threshold for extreme scale analysis," in IS&T/SPIE Electronic Imaging, 2013. [URL]
  281. R. Gessner, A. Hanson, S. Feingold, A. Cashion, A. Corcimaru, B. Wu, C. Mullins, S. Aylward, L. Reid, and P. Dayton, "Functional ultrasound imaging for assessment of extracellular matrix scaffolds used for liver organoid formation," Biomaterials, vol. 34, no. 37, pp. 9341-9351, Dec. 2013. [URL]
  282. S. Cox, D. Lipsa, I. Davies, and R. Laramee, "Visualizing the dynamics of two-dimensional foams with FoamVis," Colloids and Surfaces A: Physicochemical and Engineering Aspects, vol. 438, pp. 28-32, Dec. 2013. [URL]
  283. W. de Jong, A. Walker, and M. Hanwell, "From data to analysis: linking NWChem and Avogadro with the syntax and semantics of Chemical Markup Language," Journal of Cheminformatics, vol. 5, no. 1, Dec. 2013. [URL]
  284. J. Bischoff, B. Davis, J. Seebeck, A. Henderson, J. Zuhars, P. Marion, and C. Goodlett, "Verification and Validation of an Open Source–Based Morphology Analysis Platform to Support Implant Design," Journal of Medical Devices, vol. 7, no. 4, pp. 040903, Dec. 2013. [URL]
  285. A. Stephens, C. Quammen, B. Chang, J. Haase, R. Taylor, and K. Bloom, "The spatial segregation of pericentric cohesin and condensin in the mitotic spindle," Molecular Biology of the Cell, vol. 24, no. 24, pp. 3909-3919, Dec. 2013. [URL]
  286. E. Swears, A. Hoogs, and K. Boyer, "Pyramid Coding for Functional Scene Element Recognition in Video Scenes," in Proceedings of the IEEE International Conference on Computer Vision, 2013. [URL]
  287. Y. Xu, S. Oh, F. Yang, Z. Jiang, N. Cuntoor, A. Hoogs, and L. Davis, "System and algorithms on detection of objects embedded in perspective geometry using monocular cameras," in Proceedings of the IEEE Conference on Advanced Video and Signal Based Surveillance, 2013. [URL]
  288. M. McCormick and T. Varghese, "An Approach to Unbiased Subsample Interpolation for Motion Tracking," Ultrasonic Imaging, vol. 35, no. 2, pp. 76-89, Apr. 2013. [URL]
  289. Y. Hong, M. Niethammer, J. Andruejol, J. Kimbell, E. Pitkin, R. Superfine, S. Davis, C. Zdanski, and B. Davis, "A pediatric airway atlas and its application in subglottic stenosis," in Proceedings of the IEEE International Symposium on Biomedical Imaging, 2013. [URL]
  290. D. Lipşa, R. Laramee, S. Cox, and I. Davies, "Visualizing 3D Time-Dependent Foam Simulation Data," in Advances in Visual Computing. Springer Berlin Heidelberg, 2013, pp. 255-265. [URL]
  291. M. Grauer, P. Reynolds, M. Hoogstoel, F. Budin, M. Styner, and I. Oguz, "A midas plugin to enable construction of reproducible web-based image processing pipelines," Frontiers in Neuroinformatics, vol. 7, pp. 46, 2013. [URL]
  292. F. Budin, M. Hoogstoel, P. Reynolds, M. Grauer, S. O'Leary-Moore, and I. Oguz, "Fully automated rodent brain MR image processing pipeline on a Midas server: from acquired images to region-based statistics," Frontiers in Neuroinformatics, vol. 7, pp. 15, 2013. [URL]
  293. A. Chernikov, P. Foteinos, Y. Liu, M. Audette, A. Enquobahrie, and N. Chrisochoides, "Tetrahedral Image-to-Mesh Conversion Approaches for Surgery Simulation and Navigation," in Image-Based Geometric Modeling and Mesh Generation. Springer, 2013, pp. 69-84.
  294. W. Silva, B. Burnett, A. Chaudhary, D. DeMarle, and C. Harris, "ClimatePipes: User-friendly data access, manipulation, analysis & visualization of community climate models," Kitware Source, no. 26, 2013.
  295. A. Bauer, A. Chaudhary, T. Maxwell, B. Nouanesengsy, and J. Patchett, "Exploratory climate data visualization and analysis using DV3D and ParaView in UV-CDAT," Kitware Source, no. 25, 2013.
  296. M. Hanwell, C. Harris, and A. Vacanti, "High-performance computing made easy with MoleQueue," Kitware Source, no. 24, 2013.
  297. M. Baitsch, A. Chaudhary, and D. Truong, "Sketchalyze: Structural analysis goes mobile," Kitware Source, no. 27, 2013.
  298. K. Martin, B. Hoffman, and A. Cedilnik, Mastering CMake: a cross-platform build system, 6. ed. Kitware, 2013.
  299. J. Snape and D. Manocha, "Goal velocity obstacles for spatial navigation of multiple autonomous robots or virtual agents," in Autonomous Robots and Multirobot Systems, 2013.
  300. J. Snape, S. Guy, M. Lin, and D. Manocha, "Local and global planning for collision-free navigation in video games," in Planning in Games Workshop, 2013.
  301. H. Karimabadi, B. Loring, P. O'Leary, A. Majumdar, M. Tatineni, and B. Geveci, "In-situ visualization for global hybrid simulations," in Proceedings of the Conference on Extreme Science and Engineering Discovery Environment Gateway to Discovery, 2013. [URL]
  302. J. Brandt, T. Tucker, A. Gentile, D. Thompson, V. Kuhns, and J. Repik, "High fidelity data collection and transport service applied to the cray xe6/xk6," in Proceedings of the Cray User Group, 2013.
  303. R. Kwitt, D. Pace, M. Niethammer, and S. Aylward, "Studying Cerebral Vasculature Using Structure Proximity and Graph Kernels," in Proceedings of the Internation Conference on Medical Image Computing and Computer Assisted Intervention, 2013. [URL]
  304. Y. Hong, B. Davis, J. Marron, R. Kwitt, and M. Niethammer, "Weighted functional boxplot with application to statistical atlas construction," in Proceedings of the Internation Conference on Medical Image Computing and Computer Assisted Intervention, 2013.
  305. C. Marion, J. Pouderoux, J. Jomier, S. Jourdain, M. Hanwell, and U. Ayachit, "A hybrid visualization system for molecular models," in Proceedings of the International Conference on 3D Web Technology, 2013. [URL]
  306. J. Snape and D. Manocha, "Goal velocity obstacles for spatial navigation of multiple virtual agents," in Proceedings of the International Conference on Autonomous Agents and Multi-Agent Systems, 2013.
  307. K. Moreland, B. Geveci, K. Ma, and R. Maynard, "A classification of scientific visualization algorithms for massive threading," in Proceedings of the International Workshop on Ultrascale Visualization, 2013. [URL]
  308. B. Nouanesengsy, J. Patchett, J. Ahrens, A. Bauer, A. Chaudhary, R. Miller, B. Geveci, G. Shipman, and D. Williams, "A model for optimizing file access patterns using spatio-temporal parallelism," in Proceedings of the International Workshop on Ultrascale Visualization, 2013. [URL]
  309. J. Woodring, J. Ahrens, T. Tautges, T. Peterka, V. Vishwanath, and B. Geveci, "On-demand unstructured mesh translation for reducing memory pressure during in situ analysis," in Proceedings of the International Workshop on Ultrascale Visualization, 2013. [URL]
  310. M. Hanwell, A. Perera, W. Turner, P. O'Leary, K. Osterdahl, B. Hoffman, and W. Schroeder, "Sustainable Software Ecosystems for Open Science," in Workshop on Sustainable Software: Practices and Experiences, 2013. [URL]
  311. M. Ryoo, A. Hoogs, A. Basharat, and S. Oh, "Human activity recognition for visual surveillance," presented at 2012 9th IEEE International Conference on Advanced Video and Signal Based Surveillance (AVSS), 2012. [URL]
  312. R. Gessner, S. Aylward, and P. Dayton, "Mapping Microvasculature with Acoustic Angiography Yields Quantifiable Differences between Healthy and Tumor-bearing Tissue Volumes in a Rodent Model," Radiology, vol. 264, no. 3, pp. 733-740, Sep. 2012. [URL]
  313. A. Vaccarella, A. Enquobahrie, G. Ferrigno, and E. De Momi, "Modular multiple sensors information management for computer-integrated surgery: Modular multiple sensors information management," The International Journal of Medical Robotics and Computer Assisted Surgery, vol. 8, no. 3, pp. 253-260, Sep. 2012. [URL]
  314. K. Reddy, N. Cuntoor, A. Perera, and A. Hoogs, "Human Action Recognition in Large-Scale Datasets Using Histogram of Spatiotemporal Gradients," in Proceedings of the IEEE Conference on Advanced Video and Signal Based Surveillance, 2012. [URL]
  315. R. Kwitt, N. Vasconcelos, N. Rasiwasia, A. Uhl, B. Davis, M. Häfner, and F. Wrba, "Endoscopic image analysis in semantic space," Medical Image Analysis, vol. 16, no. 7, pp. 1415-1422, Oct. 2012. [URL]
  316. B. Wylie, D. Dunlavy, W. Davis, and J. Baumes, "Using NoSQL databases for streaming network analysis," in Proceedings of the IEEE Symposium on Large Data Analysis and Visualization, 2012. [URL]
  317. N. Cuntoor, R. Collins, and A. Hoogs, "Human-robot teamwork using activity recognition and human instruction," in Proceedings of the IEEE/RSJ International Conference on Intelligent Robots and Systems, 2012. [URL]
  318. A. Fedorov, R. Beichel, J. Kalpathy-Cramer, J. Finet, J. Fillion-Robin, S. Pujol, C. Bauer, D. Jennings, F. Fennessy, M. Sonka, J. Buatti, S. Aylward, J. Miller, S. Pieper, and R. Kikinis, "3D Slicer as an image computing platform for the Quantitative Imaging Network," Magnetic Resonance Imaging, vol. 30, no. 9, pp. 1323-1341, Nov. 2012. [URL]
  319. M. McCormick, T. Varghese, X. Wang, C. Mitchell, M. Kliewer, and R. Dempsey, "Methods for robust in vivo strain estimation in the carotid artery," Physics in Medicine and Biology, vol. 57, no. 22, pp. 7329-7353, Nov. 2012. [URL]
  320. K. Moreland, B. King, R. Maynard, and K. Ma, "Flexible Analysis Software for Emerging Architectures," in SC Companion: High Performance Computing, Networking Storage and Analysis, 2012. [URL]
  321. C. Sewell, J. Meredith, K. Moreland, T. Peterka, D. DeMarle, L. Lo, J. Ahrens, R. Maynard, and B. Geveci, "The SDAV Software Frameworks for Visualization and Analysis on Next-Generation Multi-Core and Many-Core Architectures," in SC Companion: High Performance Computing, Networking Storage and Analysis, 2012. [URL]
  322. E. Smith, R. Radke, and C. Stewart, "Physical Scale Keypoints: Matching and Registration for Combined Intensity/Range Images," International Journal of Computer Vision, vol. 97, no. 1, pp. 2-17, Mar. 2012. [URL]
  323. T. Kapur, S. Pieper, R. Whitaker, S. Aylward, M. Jakab, W. Schroeder, and R. Kikinis, "The National Alliance for Medical Image Computing, a roadmap initiative to build a free and open source software infrastructure for translational research in medical image analysis," Journal of the American Medical Informatics Association, vol. 19, no. 2, pp. 176-180, Mar. 2012. [URL]
  324. P. Marion, R. Kwitt, B. Davis, and M. Gschwandtner, "PCL and ParaView — Connecting the dots," in Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition Workshop on Point Cloud Processing, 2012. [URL]
  325. E. Swears and A. Hoogs, "Learning and recognizing complex multi-agent activities with applications to american football plays," in Proceedings of the IEEE Workshop on Applications of Computer Vision, 2012. [URL]
  326. A. Choudhury, B. Wang, P. Rosen, and V. Pascucci, "Topological analysis and visualization of cyclical behavior in memory reference traces," in IEEE Pacific Visualization Symposium, 2012. [URL]
  327. A. Vaccarella, E. De Momi, M. Valenti, G. Ferrigno, and A. Enquobahrie, "Application of unscented Kalman filter for robust pose estimation in image-guided surgery," in SPIE Medical Imaging, 2012. [URL]
  328. H. Lee, M. Audette, G. Joldes, and A. Enquobahrie, "Neurosurgery simulation using non-linear finite element modeling and haptic interaction," in SPIE Medical Imaging, 2012. [URL]
  329. R. Gessner, S. Aylward, and P. Dayton, "Imaging tortuosity: the potential utility of acoustic angiography in cancer detection and tumor assessment," Imaging in Medicine, vol. 4, no. 6, pp. 581-583, Dec. 2012. [URL]
  330. X. Wu, J. Yao, A. Enquobahrie, H. Lee, and M. Audette, "Integration of a Multigrid ODE solver into an open medical simulation framework," in International Conference of the IEEE Engineering in Medicine and Biology Society, 2012. [URL]
  331. C. Brislawn, J. Woodring, S. Mniszewski, D. DeMarle, and J. Ahrens, "Subband coding for large-scale scientific simulation data using JPEG 2000," in 2012 IEEE Southwest Symposium on Image Analysis and Interpretation, 2012. [URL]
  332. D. DeMarle, B. Geveci, J. Woodring, and J. Ahrens, "Streaming and out-of-core methods," in High Performance Visualization: Enabling Extreme-Scale Scientific Insight. CRC Press, 2012, pp. 199-218.
  333. M. Hanwell, D. Curtis, A. Vacanti, T. Vandermeersch, E. Zurek, and G. Hutchison, "Avogadro: an advanced semantic chemical editor, visualization, and analysis platform," Journal of Cheminformatics, vol. 4, no. 1, pp. 17, 2012. [URL]
  334. A. Chaudhary, B. Sherman, and E. Whiting, "Immersive ParaView experiences at Idaho National Laboratory," Kitware Source, no. 23, 2012.
  335. R. Blue, A. Chaudhary, B. Payne, and M. Woehlke, "VisGUI: A visualization framework for video analysis," Kitware Source, no. 23, 2012.
  336. A. Irimia, B. Wang, S. Aylward, M. Prastawa, D. Pace, G. Gerig, D. Hovda, R. Kikinis, P. Vespa, and J. Van Horn, "Neuroimaging of structural pathology and connectomics in traumatic brain injury: Toward personalized outcome prediction," NeuroImage: Clinical, vol. 1, no. 1, pp. 1-17, 2012. [URL]
  337. E. Smith, "Registration of combined range-intensity scans," Ph.D. dissertation, Rensselaer Polytechnic Institute, 2012.
  338. K. Moreland, J. Meredith, and B. Geveci, "Enabling production-quality scientific-discovery tools with data and execution models," Sandia National Laboratories, SAND 2012-10796P, 2012.
  339. N. Fabian, A. Bauer, R. Podhorszki, and U. Ayachit, "In-Situ Visualization with Catalyst," presented at Supercomputing Tutorials, 2012.
  340. B. Geveci and W. Schroeder, "VTK," in The Architecture of Open Source Applications. lulu.com, 2012, pp. online. [URL]
  341. X. Liu, B. Helba, K. Krishnan, P. Reynolds, M. McCormick, W. Turner, L. Ibanez, D. Yankelevitz, and R. Avila, "Fostering open science in lung cancer lesion sizing with ITK module LSTK," The Insight Journal, 2012. [URL]
  342. A. Choudhury, "Visualizing Program Memory Behavior Using Memory Reference Traces," Ph.D. dissertation, University of Utah, 2012.
  343. E. Swears, M. Turek, R. Collins, A. Perera, and A. Hoogs, "Automatic activity profile generation from detected functional regions for video scene analysis," in Video Analytics for Business Intelligence. Springer, 2012, pp. 241-269. [URL]
  344. D. Testi, D. Giunchi, G. Clapworthy, S. Aylward, X. Planes, and R. Christie, "New interactive visualisation of multiscale biomedical data," in ACM SIGGRAPH 2012 Posters on - SIGGRAPH '12, 2012. [URL]
  345. D. Pace, M. Niethammer, and S. Aylward, "Sliding Geometries in Deformable Image Registration," in Abdominal Imaging. Computational and Clinical Applications, 2012. [URL]
  346. I. Csapo, B. Davis, Y. Shi, M. Sanchez, M. Styner, and M. Niethammer, "Temporally-Dependent Image Similarity Measure for Longitudinal Analysis," in Biomedical Image Registration, 2012. [URL]
  347. C. Brownlee, J. Patchett, L. Lo, D. DeMarle, C. Mitchell, J. Ahrens, and C. Hansen, "A study of ray tracing large-scale scientific data in parallel visualization applications," in Eurographics Symposium on Parallel Graphics and Visualization, 2012.
  348. E. Wernert, W. Sherman, P. O'Leary, and E. Whiting, "A common path forward for the immersive visualization community," in IEEE VR Workshop on Immersive Visualization, 2012.
  349. A. Perera, S. Oh, M. P, T. Ma, A. Hoogs, A. Vahdat, K. Cannons, G. Mori, S. Mccloskey, B. Miller, S. Venkatesh, P. Davalos, P. Das, C. Xu, J. Corso, R. Srihari, I. Kim, Y. Cheng, Z. Huang, C. Lee, K. Tang, L. Fei-fei, and D. Koller, "TRECVID 2012 GENIE: multimedia event detection and recounting," in NIST TRECVID Workshop, 2012.
  350. I. Csapo, B. Davis, Y. Shi, M. Sanchez, M. Sanchez, M. Styner, and M. Niethammer, "Longitudinal Image Registration with Non-Uniform Appearance Change," in Proceedings of the Internation Conference on Medical Image Computing and Computer Assisted Intervention, 2012.
  351. R. Kwitt, N. Vasconcelos, S. Razzaque, and S. Aylward, "Recognition in Ultrasound Videos: Where Am I?," in Proceedings of the Internation Conference on Medical Image Computing and Computer Assisted Intervention, 2012. [URL]
  352. K. Moreland, N. Fabian, B. Geveci, U. Ayachit, and J. Ahrens, "Next-generation capabilities for large-scale scientific visualization," in SIAM Conference on Parallel Processing for Scientific Computing, 2012.
  353. H. Vo, J. Comba, B. Geveci, and C. Silva, "Streaming-Enabled Parallel Data Flow Framework in the Visualization ToolKit," Computing in Science & Engineering, vol. 13, no. 5, pp. 72-83, Sep. 2011. [URL]
  354. J. Shepherd, J. Baumes, and A. Chaudhary, "Geospatial and entity driven document visualization for non-proliferation analysis," in Geospatial and Entity Driven Document Visualization for Non-proliferation Analysis, 2011.
  355. J. Woodring, S. Mniszewski, C. Brislawn, D. DeMarle, and J. Ahrens, "Revisiting wavelet compression for large-scale climate data using JPEG 2000 and ensuring data precision," in 2011 IEEE Symposium on Large Data Analysis and Visualization, 2011. [URL]
  356. K. Moreland, U. Ayachit, B. Geveci, and K. Ma, "Dax Toolkit: A proposed framework for data analysis and visualization at Extreme Scale," in Proceedings of the IEEE Symposium on Large Data Analysis and Visualization, 2011. [URL]
  357. N. Fabian, K. Moreland, D. Thompson, A. Bauer, P. Marion, B. Geveci, M. Rasquin, and K. Jansen, "The ParaView Coprocessing Library: A scalable, general purpose in situ visualization library," in Proceedings of the IEEE Symposium on Large Data Analysis and Visualization, 2011. [URL]
  358. A. Chaudhary and J. Baumes, "Is what you see what you get? Geospatial visualizations address scale and usability (Industry Trends)," GEO World, vol. 24, no. 5, May 2011.
  359. M. Audette, D. Rivière, C. Law, L. Ibanez, S. Aylward, J. Finet, X. Wu, and M. Ewend, "Approach-specific multi-grid anatomical modeling for neurosurgery simulation with public-domain and open-source software," in Proceedings of SPIE--the International Society for Optical Engineering, 2011.
  360. D. Pace, A. Enquobahrie, H. Yang, S. Aylward, and M. Niethammer, "Deformable image registration of sliding organs using anisotropic diffusive regularization," in Proceedings of the IEEE International Symposium on Biomedical Imaging, 2011. [URL]
  361. N. Shetty, A. Chaudhary, D. Coming, W. Sherman, P. O'Leary, E. Whiting, and S. Su, "Immersive ParaView: A community-based, immersive, universal scientific visualization application," in Proceedings of the IEEE Virtual Reality Conference, 2011. [URL]
  362. M. McCormick, N. Rubert, and T. Varghese, "Bayesian Regularization Applied to Ultrasound Strain Imaging," IEEE Transactions on Biomedical Engineering, vol. 58, no. 6, pp. 1612-1620, Jun. 2011. [URL]
  363. S. Oh, A. Hoogs, A. Perera, N. Cuntoor, C. Chen, J. Lee, S. Mukherjee, J. Aggarwal, H. Lee, L. Davis, E. Swears, X. Wang, Q. Ji, K. Reddy, M. Shah, C. Vondrick, H. Pirsiavash, D. Ramanan, J. Yuen, A. Torralba, B. Song, A. Fong, A. Roy-Chowdhury, and M. Desai, "A large-scale benchmark dataset for event recognition in surveillance video," in Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition, 2011. [URL]
  364. M. Leotta and J. Mundy, "Vehicle surveillance with a generic, adaptive, 3D vehicle model," IEEE Transactions on Pattern Analysis and Machine Intelligence, vol. 33, no. 7, pp. 1457-1469, Jul. 2011. [URL]
  365. M. McCormick, "A lightweight image comparison library," Kitware Source, no. 16, Jan. 2011.
  366. A. Basharat, W. Turner, G. Stephens, B. Badillo, R. Lumpkin, P. Andre, and A. Perera, "Tracking flow of leukocytes in blood for drug analysis," in SPIE Real-Time Image and Video Processing, 2011. [URL]
  367. M. Dawkins and C. Stewart, "Scallop detection in multiple maritime environments," Rensselaer Polytechnic Institute, 2011.
  368. K. Gary, A. Enquobahrie, L. Ibanez, P. Cheng, Z. Yaniv, K. Cleary, S. Kokoori, B. Muffih, and J. Heidenreich, "Agile methods for open source safety-critical software," Software: Practice and Experience, vol. 41, no. 9, pp. 945-962, Aug. 2011. [URL]
  369. M. McCormick, E. Madsen, M. Deaner, and T. Varghese, "Absolute backscatter coefficient estimates of tissue-mimicking phantoms in the 5–50 MHz frequency range," The Journal of the Acoustical Society of America, vol. 130, no. 2, pp. 737-743, Aug. 2011. [URL]
  370. A. Vaccarella, M. Comparetti, A. Enquobahrie, G. Ferrigno, and E. De Momi, "Sensors management in robotic neurosurgery: The ROBOCAST project," in International Conference of the IEEE Engineering in Medicine and Biology Society, 2011. [URL]
  371. E. Swears and A. Hoogs, "Complex Activity Recognition using Granger Constrained Dynamic Bayesian Network," in Learning Workshop, Fort Lauderdale Florida, 2011.
  372. N. O'Boyle, R. Guha, E. Willighagen, S. Adams, J. Alvarsson, J. Bradley, I. Filippov, R. Hanson, M. Hanwell, G. Hutchison, C. James, N. Jeliazkova, A. Lang, K. Langner, A. Vacanti, D. Lowe, J. Pansanel, D. Pavlov, O. Spjuth, C. Steinbeck, A. Tenderholt, K. Theisen, and P. Murray-Rust, "Open Data, Open Source and Open Standards in chemistry: The Blue Obelisk five years on," Journal of Cheminformatics, vol. 3, no. 1, pp. 37, 2011. [URL]
  373. S. Adams, P. de Castro, P. Echenique, J. Estrada, M. Hanwell, P. Murray-Rust, P. Sherwood, J. Thomas, and J. Townsend, "The Quixote project: Collaborative and Open Quantum Chemistry data management in the Internet age," Journal of Cheminformatics, vol. 3, no. 1, pp. 38, 2011. [URL]
  374. B. Davis and B. Hoffman, "Issue RADAR Using Git/Master/Mantis," Kitware Source, 2011.
  375. H. Yang, M. Audette, A. Enquobahrie, J. Finet, and S. Barre, "The Application of Textbook-Based Surgical Ontologies to Neurosurgery Simulation Requirements," in Computer Assisted Radiology and Surgery: Proceedings of the International Congress and Exhibition, 2011.
  376. A. Perera, S. Oh, M. Leotta, I. Kim, B. Byun, C. Lee, S. McCloskey, B. Miller, Z. Huang, A. Vahdat, W. Yang, G. Mori, K. Tang, D. Koller, L. Fei-Fei, K. Li, G. Chen, J. Corso, Y. Fu, R. Srihari, Y. Fu, and R. Srihari, "GENIE TRECVID 2011 Multimedia Event Detection : Late-Fusion Approaches to Combine Multiple Audio-Visual features," in NIST TRECVID Workshop, 2011.
  377. M. Niethammer, G. Hart, D. Pace, P. Vespa, A. Irimia, J. Van Horn, and S. Aylward, "Geometric Metamorphosis," in Proceedings of the Internation Conference on Medical Image Computing and Computer Assisted Intervention, 2011. [URL]
  378. H. Karimabadi, B. Loring, H. Vu, Y. Omelchenko, M. Tatineni, A. Mujumdar, U. Ayachit, and B. Geveci, "Petascale Global Kinetic Simulations of The Magnetosphere and Visualization Strategies for Analysis of Very Large Multi-Variate Data Sets," in Proceedings of the International Conference of Numerical Modeling of Space Plasma Flows, 2011.
  379. J. Jomier, S. Jourdain, U. Ayachit, and C. Marion, "Remote visualization of large datasets with MIDAS and ParaViewWeb," in Proceedings of the International Conference on 3D Web Technology, 2011. [URL]
  380. K. Moreland, M. Hereld, M. Papka, S. Klasky, R. Oldfield, P. Marion, S. Jourdain, N. Podhorszki, V. Vishwanath, N. Fabian, C. Docan, and M. Parashar, "Examples of in transit visualization," in Proceedings of the international workshop on Petascal data analytics: challenges and opportunities, 2011. [URL]
  381. K. Moreland, N. Fabian, S. Klasky, and B. Geveci, "Flexible in situ with ParaView," in Workshop on Ultrascale Visualization, 2011.
  382. M. Turek, A. Hoogs, and R. Collins, "Unsupervised Learning of Functional Categories in Video Scenes," in Proceedings of the European Conference on Computer Vision, 2010. [URL]
  383. E. Madsen, G. Frank, M. McCormick, M. Deaner, and T. Stiles, "Anechoic sphere phantoms for estimating 3-D resolution of very-high-frequency ultrasound scanners," IEEE Transactions on Ultrasonics, Ferroelectrics and Frequency Control, vol. 57, no. 10, pp. 2284-2292, Oct. 2010. [URL]
  384. R. Gessner, R. Kothadia, S. Feingold, S. Aylward, E. Bullitt, and P. Dayton, "Blood vessel structural morphology derived from 3D dual-frequency ultrasound images," in 2010 IEEE International Ultrasonics Symposium, 2010. [URL]
  385. J. Ahrens, K. Heitmann, M. Petersen, J. Woodring, S. Williams, P. Fasel, C. Ahrens, C. Hsu, and B. Geveci, "Verifying Scientific Simulations via Comparative and Quantitative Visualization," IEEE Computer Graphics and Applications, vol. 30, no. 6, pp. 16-28, Nov. 2010. [URL]
  386. W. Jeong, J. Beyer, M. Hadwiger, R. Blue, C. Law, A. Vazquez-Reina, R. Reid, J. Lichtman, and H. Pfister, "Ssecrett and NeuroTrace: Interactive Visualization and Analysis Tools for Large-Scale Neuroscience Data Sets," IEEE Computer Graphics and Applications, vol. 30, no. 3, pp. 58-70, May 2010. [URL]
  387. M. Audette, A. Kolahi, A. Enquobahrie, C. Gatti, and K. Cleary, "Reducing depth uncertainty in large surgical workspaces, with applications to veterinary medicine," in SPIE Medical Imaging, 2010. [URL]
  388. X. Luo, M. Shephard, L. Yin, R. O’Bara, R. Nastasi, and M. Beall, "Construction of near optimal meshes for 3D curved domains with thin sections and singularities for p-version method," Engineering with Computers, vol. 26, no. 3, pp. 215-229, Jun. 2010. [URL]
  389. Z. Sun and A. Hoogs, "Image comparison by compound disjoint information with applications to perceptual visual quality assessment, image registration and tracking," International Journal of Computer Vision, vol. 88, no. 3, pp. 461-488, Jul. 2010. [URL]
  390. N. Cowlam, A. Wildes, M. Hanwell, N. Dearing, and A. Jenner, "Non-collinear ferrimagnetism in a Fe 64 Er 19 B 17 metallic glass," Journal of Physics: Condensed Matter, vol. 22, no. 29, pp. 296003, Jul. 2010. [URL]
  391. E. Bullitt, D. Zeng, B. Mortamet, A. Ghosh, S. Aylward, W. Lin, B. Marks, and K. Smith, "The effects of healthy aging on intracerebral blood vessels visualized by magnetic resonance angiography," Neurobiology of Aging, vol. 31, no. 2, pp. 290-300, Feb. 2010. [URL]
  392. M. Hanwell, T. Madison, and G. Hutchison, "Charge Transport in Imperfect Organic Field Effect Transistors: Effects of Explicit Defects and Electrostatics," The Journal of Physical Chemistry C, vol. 114, no. 48, pp. 20417-20423, Dec. 2010. [URL]
  393. N. Cuntoor, A. Basharat, A. Perera, and A. Hoogs, "Track Initialization in Low Frame Rate and Low Resolution Videos," in Proceedings of the IEEE International Conference on Pattern Recognition, 2010. [URL]
  394. S. Oh and A. Hoogs, "Unsupervised Learning of Activities in Video Using Scene Context," in Proceedings of the IEEE International Conference on Pattern Recognition, 2010. [URL]
  395. M. McCormick, "Visual debugging of ITK," Kitware Source, no. 13, Apr. 2010.
  396. M. Leotta, "Generic, deformable models for 3-d vehicle surveillance," Brown University, 2010.
  397. M. McCormick, "An Open Source, Fast Ultrasound B-Mode Implementation for Commodity Hardware," Insight Jounral, no. January-June 2010, 2010. [URL]
  398. M. McCormick, "Higher Order Accurate Derivative and Gradient Calculation in ITK," Insight Journal, no. July-December 2010, 2010. [URL]
  399. B. King and W. Hoffman, "Distributed version control: The future of history," Kitware Source, no. 15, 2010.
  400. D. DeMarle and J. Woodring, "Multi-Resolution Streaming in VTK and ParaView," Kitware Source, no. 15, 2010.
  401. L. Lo and D. DeMarle, "Rendered realism at (nearly) real time rates," Kitware Source, no. 14, 2010.
  402. Z. Sun, R. Kaucic, P. Mendoca, and A. Can, "A Statistical Approach to Industrial Anomaly Detection," in European Conference on Nondestructive Testing, 2010.
  403. S. Jourdain, U. Ayachit, and B. Geveci, "ParaViewWeb, a web framework for 3D visualization and data processing," in IADIS International Conference on Visual Communication, 2010.
  404. X. Liu, B. Davis, M. Niethammer, S. Pizer, and G. Mageras, "Prediction-driven Respiratory Motion Atlas Formation for 4D Image- guided Radiation Therapy in Lung," in MICCAI Workshop on Pulmonary Image Analysis, 2010.
  405. D. Hutchison, T. Kanade, J. Kittler, J. Kleinberg, F. Mattern, J. Mitchell, M. Naor, O. Nierstrasz, C. Pandu Rangan, B. Steffen, M. Sudan, D. Terzopoulos, D. Tygar, M. Vardi, G. Weikum, S. Oh, A. Hoogs, M. Turek, and R. Collins, "Content-Based Retrieval of Functional Objects in Video Using Scene Context," in Proceedings of the European Conference on Computer Vision, 2010. [URL]
  406. A. Basharat and M. Shah, "Time series prediction by chaotic modeling of nonlinear dynamical systems," in Proceedings of the IEEE International Conference on Computer Vision, 2009. [URL]
  407. J. Becker, C. Stewart, and R. Radke, "LiDAR inpainting from a single image," in Proceedings of the IEEE International Conference on Computer Vision Workshops, 2009. [URL]
  408. D. DeMarle and U. Ayachit, "Customizing ParaView," in IEEE Vis 2009, 2009.
  409. G. Piliere, M. Van Horn, R. Dixon, J. Stavas, S. Aylward, and E. Bullitt, "Vessel target location estimation during the TIPS procedure," Medical Image Analysis, vol. 13, no. 3, pp. 519-529, Jun. 2009. [URL]
  410. A. Hines, S. Howington, B. White, O. Eslinger, C. Kees, M. Farthing, R. O'Bara, R. Blue, Y. Yuan, A. Bauer, and B. King, "Computational Model Builder (CMB): A Cross-Platform Suite of Tools for Model Creation and Setup," in DoD High Performance Computing Modernization Program Users Group Conference, 2009. [URL]
  411. M. Leotta and J. Mundy, "Predicting high resolution image edges with a generic, adaptive, 3-D vehicle model," in Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition Workshops, 2009. [URL]
  412. B. Wylie and J. Baumes, "A unified toolkit for information and scientific visualization," in IS&T/SPIE Electronic Imaging, 2009. [URL]
  413. J. Jomier, S. Aylward, C. Marion, J. Lee, and M. Styner, "A digital archiving system and distributed server-side processing of large datasets," in SPIE Medical Imaging, 2009. [URL]
  414. J. Jomier, L. Ibanez, A. Enquobahrie, D. Pace, and K. Cleary, "An open-source framework for testing tracking devices using Lego Mindstorms," in SPIE Medical Imaging, 2009. [URL]
  415. J. Lee, J. Jomier, S. Aylward, M. Tyszka, S. Moy, J. Lauder, and M. Styner, "Evaluation of atlas based mouse brain segmentation," in SPIE Medical Imaging, 2009. [URL]
  416. E. Swears and A. Hoogs, "Functional scene element recognition for video scene analysis," in Proceedings of the IEEE Workshop on Motion and Video Computing, 2009. [URL]
  417. E. Bullitt, M. Ewend, J. Vredenburgh, A. Friedman, W. Lin, K. Wilber, D. Zeng, S. Aylward, and D. Reardon, "Computerized assessment of vessel morphological changes during treatment of glioblastoma multiforme: Report of a case imaged serially by MRA over four years," NeuroImage, vol. 47, pp. T143-T151, Aug. 2009. [URL]
  418. K. Cleary, P. Cheng, A. Enquobahrie, and Z. Yaniv, IGSTK: The book. Signature Book Printing, 2009.
  419. J. Ahrens, J. Woodring, D. DeMarle, J. Patchett, and M. Maltrud, "Interactive remote large-scale data visualization via prioritized multi-resolution streaming," in Proceedings of the 2009 Workshop on Ultrascale Visualization - UltraVis '09, 2009. [URL]
  420. A. Perera, R. Collins, and A. Hoogs, "Evaluation of compression schemes for wide area video," in Proceedings of the IEEE Applied Imagery Pattern Recognition Workshop, 2008. [URL]
  421. A. Enquobahrie, D. Gobbi, M. Turek, P. Cheng, Z. Yaniv, F. Lindseth, and K. Cleary, "Designing tracking software for image-guided surgery applications: IGSTK experience," International Journal of Computer Assisted Radiology and Surgery, vol. 3, no. 5, pp. 395-403, Nov. 2008. [URL]
  422. E. Smith, B. King, C. Stewart, and R. Radke, "Registration of combined range–intensity scans: Initialization through verification," Computer Vision and Image Understanding, vol. 110, no. 2, pp. 226-244, May 2008. [URL]
  423. K. Barnard, Q. Fan, R. Swaminathan, A. Hoogs, R. Collins, P. Rondot, and J. Kaufhold, "Evaluation of localized semantics: data, methodology, and experiments," International Journal of Computer Vision, vol. 77, no. 1, pp. 199-217, May 2008. [URL]
  424. I. Oguz, J. Cates, T. Fletcher, R. Whitaker, D. Cool, S. Aylward, and M. Styner, "Cortical correspondence using entropy-based particle systems and local features," in Proceedings of the IEEE International Symposium on Biomedical Imaging, 2008. [URL]
  425. Z. Zhao, D. Wallace, S. Freedman, and S. Aylward, "A tool for computer-aided diagnosis of retinopathy of prematurity," in Medical Imaging, 2008. [URL]
  426. O. Solberg, G. Tangen, F. Lindseth, T. Sandnes, A. Enquobahrie, L. Ibáñez, P. Cheng, D. Gobbi, and K. Cleary, "Integration of a real-time video grabber component with the open source image-guided surgery toolkit IGSTK," in SPIE Medical Imaging, 2008. [URL]
  427. A. Hoogs and A. Perera, "Video Activity Recognition in the Real World," in National Conference on Artificial Intelligence, 2008. [URL]
  428. B. Wylie, J. Baumes, and T. Shead, "G-Space: a linear time graph layout," in IS&T International Symposium on Electronic Imaging, 2008. [URL]
  429. A. Cedilnik, J. Baumes, L. Ibanez, S. Megason, and B. Wylie, "Integration of information and volume visualization for analysis of cell lineage and gene expression during embryogenesis," in IS&T International Symposium on Electronic Imaging, 2008. [URL]
  430. A. Hoogs, S. Bush, G. Brooksby, A. Perera, M. Dausch, and N. Krahnstoever, "Detecting Semantic Group Activities Using Relational Clustering," in Proceedings of the IEEE Workshop on Motion and Video Computing, 2008. [URL]
  431. E. Swears, A. Hoogs, and A. Perera, "Learning Motion Patterns in Surveillance Video using HMM Clustering," in Proceedings of the IEEE Workshop on Motion and Video Computing, 2008. [URL]
  432. J. Baumes, H. Chen, M. Francisco, M. Goldberg, M. Magdon-Ismail, and W. Wallace, "ViSAGE: A Virtual laboratory for Simulation and Analysis of Social Group Evolution," ACM Transactions on Autonomous and Adaptive Systems, vol. 3, no. 3, pp. 1-35, Aug. 2008. [URL]
  433. K. Martin, B. Hoffman, and A. Cedilnik, Mastering CMake: a cross-platform build system, 4. ed. Kitware, 2008.
  434. B. King, "Range data analysis by free-space modeling and tensor voting," Ph.D. dissertation, Rensselaer Polytechnic Institute, 2008.
  435. K. Moreland, D. Rogers, J. Greenfield, B. Geveci, P. Marion, A. Neundorf, and K. Eschenberg, "Large Scale Visualization on the Cray XT3 Using ParaView," in Cray User Group, 2008.
  436. E. Bullitt, S. Aylward, T. Van Dyke, and W. Lin, "Computer-assisted measurement of vessel shape from 3T magnetic resonance angiography of mouse brain," Methods, vol. 43, no. 1, pp. 29-34, Sep. 2007. [URL]
  437. F. Wheeler and A. Hoogs, "Moving Vehicle Registration and Super-Resolution," in Proceedings of the IEEE Applied Imagery Pattern Recognition Workshop, 2007. [URL]
  438. P. Crossno, B. Wylie, A. Wilson, J. Greenfield, E. Stanton, T. Shead, L. Ice, K. Moreland, J. Baumes, and B. Geveci, "Intelligence Analysis Using Titan," in Proceedings of the IEEE Symposium on Visual Analytics Science and Technology, 2007. [URL]
  439. J. Biddiscombe, B. Geveci, K. Martin, K. Moreland, and D. Thompson, "Time Dependent Processing in a Parallel Pipeline Architecture," IEEE Transactions on Visualization and Computer Graphics, vol. 13, no. 6, pp. 1376-1383, Nov. 2007. [URL]
  440. A. Enquobahrie, P. Cheng, K. Gary, L. Ibanez, D. Gobbi, F. Lindseth, Z. Yaniv, S. Aylward, J. Jomier, and K. Cleary, "The Image-Guided Surgery Toolkit IGSTK: An Open Source C++ Software Toolkit," Journal of Digital Imaging, vol. 20, no. S1, pp. 21-33, Nov. 2007. [URL]
  441. A. Enquobahrie, A. Reeves, D. Yankelevitz, and C. Henschke, "Automated Detection of Small Pulmonary Nodules in Whole Lung CT Scans," Academic Radiology, vol. 14, no. 5, pp. 579-593, May 2007. [URL]
  442. P. Cheng, L. Ibanez, D. Gobbi, K. Gary, S. Aylward, J. Jomier, A. Enquobahrie, H. Zhang, H. Kim, M. Blake, and K. Cleary, "The Image-Guided Surgery ToolKit IGSTK: an open source C++ software toolkit," in SPIE Medical Imaging, 2007. [URL]
  443. K. Martin and B. Hoffman, "An Open Source Approach to Developing Software in a Small Organization," IEEE Software, vol. 24, no. 1, pp. 46-53, Jan. 2007. [URL]
  444. S. DiMaio, T. Kapur, K. Cleary, S. Aylward, P. Kazanzides, K. Vosburgh, R. Ellis, J. Duncan, K. Farahani, H. Lemke, T. Peters, W. Lorensen, D. Gobbi, J. Haller, L. Clarke, S. Pizer, R. Taylor, R. Galloway, G. Fichtinger, N. Hata, K. Lawson, C. Tempany, R. Kikinis, and F. Jolesz, "Challenges in image-guided therapy system design," NeuroImage, vol. 37, pp. S144-S151, Jan. 2007. [URL]
  445. J. Ahrens, N. Desai, P. McCormick, K. Martin, and J. Woodring, "A modular extensible visualization system architecture for culled prioritized data streaming," in Electronic Imaging 2007, 2007. [URL]
  446. K. Moreland, L. Avila, and L. Fisk, "Parallel unstructured volume rendering in ParaView," in IS&T International Symposium on Electronic Imaging, 2007. [URL]
  447. S. Aylward, J. Jomier, S. Barre, B. Davis, and L. Ibanez, "Optimizing ITK's Registration Methods for Multi-processor, Shared-memory Systems," in MICCAI Workshop on Open Source and Open Data, 2007.
  448. J. Baumes, M. Goldberg, M. Magdon-Ismail, and W. Wallace, "Identification of hidden groups in communications," in Handbooks in Information Systems, Volume 2: National Security. Elsevier, 2007, pp. 209-242.
  449. J. Biddiscombe, B. Geveci, and K. Martin, "A Pipeline Architecture for Parallel Processing of Time-Dependent Data within a VTK Framework," in Proceedings of the Eurographics Symposium on Parallel Graphics and Visualization, 2007.
  450. B. Davis, P. Fletcher, E. Bullitt, and S. Joshi, "Population Shape Regression From Random Design Data," in Proceedings of the IEEE International Conference on Computer Vision, 2007. Winner, Marr Prize Best Paper Award. [URL]
  451. P. Cheng, H. Zhang, H. Kim, K. Gary, M. Blake, D. Gobbi, S. Aylward, J. Jomier, A. Enquobahrie, R. Avila, L. Ibanez, and K. Cleary, "IGSTK: Framework and example application using an open source toolkit for image-guided surgery applications," in SPIE Medical Imaging, 2006. [URL]
  452. W. Schroeder, F. Bertel, M. Malaterre, D. Thompson, P. Pebay, R. O'Bara, and S. Tendulkar, "Methods and framework for visualizing higher-order finite elements," IEEE Transactions on Visualization and Computer Graphics, vol. 12, no. 4, pp. 446-460, Jul. 2006. [URL]
  453. E. Blasch, H. Ling, D. Shen, G. Chen, R. Hammound, A. Basharat, R. Collins, A. Aved, and J. Nagy, "Video-to-text information fusion evaluation for level 5 user refinement," in 2015 18th International Conference on Information Fusion (Fusion), 2006.
  454. K. Gary, L. Ibanez, S. Aylward, D. Gobbi, M. Blake, and K. Cleary, "IGSTK: An Open Source Software Toolkit for Image-Guided Surgery," Computer, vol. 39, no. 4, pp. 46-53, Apr. 2006. [URL]
  455. J. Baumes, "Algorithms for discovering hidden groups in communications," Ph.D. dissertation, Rensselaer Polytechnic Institute, 2006.
  456. W. Schroeder, L. Avila, K. Martin, W. Hoffman, and C. Law, The VTK User's Guide. Kitware, 2006.
  457. W. Schroeder, K. Martin, B. Lorensen, L. Sobierajski, R. Avila, and C. Law, Visualization Toolkit: An Object-Oriented Approach to 3D Graphics, 4th. Kitware, 2006.
  458. S. Pieper, B. Lorensen, W. Schroeder, and R. Kikinis, "The NA-MIC Kit: ITK, VTK, Pipelines, Grids and 3D Slicer as An Open Platform for the Medical Image Computing Community," in 3rd IEEE International Symposium on Biomedical Imaging: Macro to Nano, 2006., 2006. [URL]
  459. A. Cedilnik, B. Geveci, K. Moreland, J. Ahrens, and J. Favre, "Remote Large Data Visualization in the ParaView Framework," in Proceedings of the Eurographics Symposium on Parallel Graphics and Visualization, 2006. [URL]
  460. L. Ibanez, R. Avila, and S. Aylward, "Open Source and Open Science: How it is Changing the Medical Imaging Community," in Proceedings of the IEEE International Symposium on Biomedical Imaging, 2006. [URL]
  461. J. Jomier, E. Bullitt, M. Van Horn, C. Pathak, and S. Aylward, "3D/2D Model-to-Image Registration Applied to TIPS Surgery," in Proceedings of the Internation Conference on Medical Image Computing and Computer Assisted Intervention, 2006. [URL]
  462. E. Bullitt, D. Zeng, G. Gerig, S. Aylward, S. Joshi, J. Smith, W. Lin, and M. Ewend, "Vessel Tortuosity and Brain Tumor Malignancy," Academic Radiology, vol. 12, no. 10, pp. 1232-1240, Oct. 2005. [URL]
  463. S. Aylward, K. Cleary, and D. Hawkes, "Intraoperative Image Processing for Surgical Guidance," IEEE Transactions on Medical Imaging, vol. 24, no. 11, pp. 1401-1404, Nov. 2005. [URL]
  464. E. Cole, E. Pisano, D. Zeng, K. Muller, S. Aylward, S. Park, C. Kuzmiak, M. Koomen, D. Pavic, R. Walsh, J. Baker, E. Gimenez, and R. Freimanis, "The Effects of Gray Scale Image Processing on Digital Mammography Interpretation Performance1," Academic Radiology, vol. 12, no. 5, pp. 585-595, May 2005. [URL]
  465. E. Bullitt, K. Muller, I. Jung, W. Lin, and S. Aylward, "Analyzing attributes of vessel populations," Medical Image Analysis, vol. 9, no. 1, pp. 39-49, Feb. 2005. [URL]
  466. D. DeMarle, C. Gribble, S. Boulos, and S. Parker, "Memory sharing for interactive ray tracing on clusters," Parallel Computing, vol. 31, no. 2, pp. 221-242, Feb. 2005. [URL]
  467. K. Martin, L. Ibáñez, L. Avila, S. Barré, and J. Kaspersen, "Integrating segmentation methods from the Insight Toolkit into a visualization application," Medical Image Analysis, vol. 9, no. 6, pp. 579-593, Dec. 2005. [URL]
  468. D. Shelton, G. Stetten, S. Aylward, L. Ibáñez, A. Cois, and C. Stewart, "Teaching medical image analysis with the Insight Toolkit," Medical Image Analysis, vol. 9, no. 6, pp. 605-611, Dec. 2005. [URL]
  469. E. Bullitt and S. Aylward, "Visualizing blood vessel trees in three dimensions: clinical applications," in Medical Imaging, 2005. [URL]
  470. J. Ahrens, B. Geveci, and C. Law, "ParaView: An End-User Tool for Large-Data Visualization," in The Visualization Handbook. Academic Press, 2005, pp. 717-731.
  471. W. Schroeder and K. Martin, "Overview of Visualization," in Visualization Handbook. Elsevier, 2005, pp. 3-35. [URL]
  472. L. Ibanez, G. Kindlmann, and S. Aylward, "Hot topics in 3D medical image visualization," in ACM SIGGRAPH 2005 Courses on - SIGGRAPH '05, 2005. [URL]
  473. W. Schroeder, F. Bertel, M. Malaterre, D. Thompson, and P. Pebay, "Framework for Visualizing Higher-Order Basis Functions," in IEEE Visualization, 2005. [URL]
  474. A. Komlodi, P. Rheingans, U. Ayachit, J. Goodall, and A. Joshi, "A user-centered look at glyph-based security visualization," in IEEE Workshop on Visualization for Computer Security, 2005. [URL]
  475. B. King, T. Malisiewicz, C. Stewart, and R. Radke, "Registration of Multiple Range Scans as a Location Recognition Problem: Hypothesis Generation, Refinement and Verification," in International Conference on 3-D Digital Imaging and Modeling, 2005. [URL]
  476. Z. Zhao, S. Aylward, and E. Teoh, "A novel 3D partitioned active shape model for segmentation of brain MR images," in Proceedings of the Internation Conference on Medical Image Computing and Computer Assisted Intervention, 2005.
  477. J. Jomier, V. LeDigarcher, and S. Aylward, "Automatic vascular tree formation using the Mahalanobis distance," in Proceedings of the Internation Conference on Medical Image Computing and Computer Assisted Intervention, 2005.
  478. J. Jomier, V. LeDigarcher, and S. Aylward, "Comparison of Vessel Segmentations Using STAPLE," in Proceedings of the Internation Conference on Medical Image Computing and Computer Assisted Intervention, 2005. [URL]
  479. S. Aylward, J. Jomier, C. Vivert, V. LeDigarcher, and E. Bullitt, "Spatial graphs for intra-cranial vascular network characterization, generation, and discrimination," in Proceedings of the Internation Conference on Medical Image Computing and Computer Assisted Intervention, 2005.
  480. W. Schroeder and M. Shephard, "Computational Visualization," in Encyclopedia of Computational Mechanics. John Wiley & Sons, Ltd, 2004. [URL]
  481. W. Schroeder, L. Ibanez, and K. Martin, "Software Process: The key to developing robust, reusable and maintainable open-source software," in 2004 2nd IEEE International Symposium on Biomedical Imaging: Macro to Nano (IEEE Cat No. 04EX821), 2004. [URL]
  482. W. Schroeder, B. Geveci, and M. Malaterre, "Compatible triangulations of spatial decompositions," in IEEE Visualization, 2004. [URL]
  483. B. King and W. Schroeder, "Automated wrapping of complex c++ code," Dr. Dobb's Journal, Jan. 2003.
  484. L. Ibáñez, W. Schroeder, L. Ng, and J. Cates, The ITK Software Guide. Kitware, Inc., 2003.
  485. W. Hoffman and K. Martin, "The CMake build manager," Dr. Dobb's Journal, 2003.
  486. K. Martin, W. Hoffman, and B. Geveci, "Creating Libraries for Multiple Programming Languages," Dr. Dobb's Journal, 2002.
  487. T. Yoo, M. Ackerman, W. Lorensen, W. Schroeder, V. Chalana, S. Aylward, D. Metaxas, and W. Ross, "Engineering and Algorithm Design for an Image Processing API: A Technical Report on ITK - the Insight Toolkit," in Proceedings of the Medicine Meets Virtual Reality Conference, 2002. [URL]
  488. B. Geveci and J. Walker, "Nonlinear resonance of rectangular plates," Proceedings of the Royal Society A: Mathematical, Physical and Engineering Sciences, vol. 457, no. 2009, pp. 1215-1240, May 2001. [URL]
  489. S. Barre, C. Fernandez-Maloigne, P. Paume, and G. Subrenat, "Three-dimensional visualization system as an aid for facial surgical planning," in SPIE Medical Imaging, 2001. [URL]
  490. J. Ahrens, K. Brislawn, K. Martin, B. Geveci, C. Law, and M. Papka, "Large-scale data visualization using parallel data streaming," IEEE Computer Graphics and Applications, vol. 21, no. 4, pp. 34-41, 2001. [URL]
  491. H. Pfister, B. Lorensen, C. Bajaj, G. Kindlmann, W. Schroeder, L. Avila, K. Raghu, R. Machiraju, and J. Lee, "The transfer function bake-off," IEEE Computer Graphics and Applications, vol. 21, no. 1, pp. 16-22, 2001. [URL]
  492. W. Schroeder, L. Avila, and W. Hoffman, "Visualizing with VTK: A tutorial," IEEE Computer Graphics and Applications, vol. 20, no. 5, pp. 20-27, Oct. 2000. [URL]
  493. K. Martin, S. Erne, C. Law, S. Conforto, J. Mallick, and B. Tatar, "Multiple Modality Biomagnetic Analysis System," in Biomag 96. Springer New York, 2000, pp. 1146-1149. [URL]
  494. W. Hoffman and R. Curwen, "Pseudo-incremental linking for c/c++," Dr. Dobb's Journal, 1999.
  495. C. Law, W. Schroeder, K. Martin, and J. Temkin, "A multi-threaded streaming pipeline architecture for large structured data sets," in Proceedings Visualization '99 (Cat. No.99CB37067), 1999. [URL]
  496. C. Hardy, R. Darrow, J. Pauly, A. Ken, C. Dumoulin, B. Hu, and K. Martin, "Interactive coronary MRI," Magnetic Resonance in Medicine, vol. 40, no. 1, pp. 105-111, Jul. 1998. [URL]
  497. L. Hoebel, W. Lorensen, and K. Martin, "Integrating graphics and abstract data to visualize temporal constraints," ACM SIGART Bulletin, vol. 9, no. 3-4, pp. 18-23, Dec. 1998. [URL]
  498. Y. Chiang, C. Silva, and W. Schroeder, "Interactive out-of-core isosurface extraction," in Proceedings Visualization '98 (Cat. No.98CB36276), 1998. [URL]
  499. W. Schroeder and T. Citriniti, "Decimating Polygonal Meshes," Dr. Dobb's Journal, Jul. 1997. [URL]
  500. W. Schroeder, "A topology modifying progressive decimation algorithm," in Proceedings of the IEEE Visualization Conference, 1997. [URL]

Bibliography generated 2020-11-03-15:00:08 (4125)