Digital Pathology

We are building a suite of open source web-based informatics tools that manage, visualize, and analyze massive and growing collections of data in digital pathology. The key solutions in the making include Digital Slide Archive (DSA), HistomicsTK, and Large-image. DSA is a web-based platform for the aggregation, management, and dissemination of large collections of whole-slide histopathology images, along with associated clinical and genomic metadata. HistomicsTK serves as both a web-based analytics platform and a standalone Python toolkit. It contains computer vision and machine learning algorithms for the quantitative analysis of whole-slide histopathology images and associated data. Large-image supports the web-based visualization and annotation of large multi-resolution whole-slide histopathology images. It also includes a Python API for reading/writing these images in a tiled fashion.