Medical Publications

  1. J. Prothero, J. Vimort, A. Ruellas, J. Marron, H. Shah, L. Cevidanes, E. Benavides, and B. Paniagua, "Advanced statistical analysis to classify high dimensionality textural probability-distribution matrices," in submitted to Society of Photographic Instrumentation Engineers (SPIE) in Medical Imaging Conference 2019, 2019.
  2. P. Hernandez-Cerdan, B. Paniagua, J. Prothero, J. Marron, E. Livingston, T. Bateman, and M. McCormick, "Methods for quantitative characterization of bone injury from computed-tomography images," in submitted to Society of Photographic Instrumentation Engineers (SPIE) in Medical Imaging Conference 2019, 2019.
  3. A. AlHadidi, B. Paniagua, R. Cook, D. Tyndall, Z. Baqain, and L. Cevidanes, "The use of a custom-made virtual template for corrective surgeries of asymmetric patients: proof of principle and a multi-center end-user survey," International Journal of Computer Assisted Radiology and Surgery, Sep. 2018. [URL]
  4. D. Zukić, D. Byrd, P. Kinahan, and A. Enquobahrie, "Calibration Software for Quantitative PET/CT Imaging Using Pocket Phantoms," Tomography: A Journal for Imaging Research, vol. 4, no. 3, pp. 148-158, Sep. 2018. [URL]
  5. J. Prothero, M. McCormick, B. Paniagua, J. Vimort, A. Ruellas, J. Marron, L. Cevidanes, and E. Benavides, "Detection of bone loss via subchondral bone analysis," in Medical Imaging 2018: Biomedical Applications in Molecular, Structural, and Functional Imaging, 2018. [URL]
  6. J. Prieto, P. de Dumast, C. Mirabel, B. Paniagua, L. Cevidanes, N. Tubau, M. Styner, A. Ruellas, and M. Yatabe, "SVA: shape variation analyzer," in Medical Imaging 2018: Biomedical Applications in Molecular, Structural, and Functional Imaging, 2018. [URL]
  7. I. Lyu, J. Perdomo, G. Yapuncich, B. Paniagua, D. Boyer, and M. Styner, "Group-wise shape correspondence of variable and complex objects," in Medical Imaging 2018: Image Processing, 2018. [URL]
  8. B. Paniagua, H. Shah, P. Hernandez-Cerdan, F. Budin, D. Chittajallu, R. Walter, A. Mol, A. Khan, and J. Vimort, "Automatic quantification framework to detect cracks in teeth," in SPIE Medical Imaging, 2018. [URL]
  9. V. Arikatla, M. Tyagi, A. Enquobahrie, T. Nguyen, G. Blakey, R. White, and B. Paniagua, "High fidelity virtual reality orthognathic surgery simulator," in SPIE Medical Imaging, 2018. [URL]
  10. S. Horvath, B. Paniagua, J. Andruejol, A. Porras, M. Linguraru, and A. Enquobahrie, "Osteotomy planner: an open-source tool for osteotomy simulation," in SPIE Medical Imaging, 2018. [URL]
  11. P. de Dumast, C. Mirabel, L. Cevidanes, A. Ruellas, M. Yatabe, M. Ioshida, N. Ribera, L. Michoud, L. Gomes, C. Huang, H. Zhu, L. Muniz, B. Shoukri, B. Paniagua, M. Styner, S. Pieper, F. Budin, J. Vimort, L. Pascal, and J. Prieto, "A web-based system for neural network based classification in temporomandibular joint osteoarthritis," Computerized Medical Imaging and Graphics, vol. 67, pp. 45-54, Jul. 2018. [URL]
  12. A. Porras, B. Paniagua, S. Ensel, R. Keating, G. Rogers, A. Enquobahrie, and M. Linguraru, "Locally Affine Diffeomorphic Surface Registration and Its Application to Surgical Planning of Fronto-Orbital Advancement," IEEE Transactions on Medical Imaging, vol. 37, no. 7, pp. 1690-1700, Jul. 2018. [URL]
  13. L. Tu, M. Styner, J. Vicory, S. Elhabian, R. Wang, J. Hong, B. Paniagua, J. Prieto, D. Yang, R. Whitaker, and S. Pizer, "Skeletal Shape Correspondence Through Entropy," IEEE Transactions on Medical Imaging, vol. 37, no. 1, pp. 1-11, Jan. 2018. [URL]
  14. A. Oh, M. Mastromanolis, B. Paniagua, A. Enquobahrie, M. Linguraru, L. Tu, A. Porras, N. Lepore, D. Tsering, R. Keating, and G. Rogers, "Radiation-free quantification of head malformations in craniosynostosis patients from 3D photography," in Medical Imaging 2018: Computer-Aided Diagnosis, 2018. [URL]
  15. L. Gomes, L. Soares Cevidanes, M. Gomes, A. Carlos de Oliveira Ruellas, D. Obelenis Ryan, B. Paniagua, L. Wolford, and J. Gonçalves, "Three-dimensional quantitative assessment of surgical stability and condylar displacement changes after counterclockwise maxillomandibular advancement surgery: Effect of simultaneous articular disc repositioning," American Journal of Orthodontics and Dentofacial Orthopedics, vol. 154, no. 2, pp. 221-233, Aug. 2018. [URL]
  16. A. Lasso, H. Nam, P. Dinh, C. Pinter, J. Fillion-Robin, S. Pieper, S. Jhaveri, J. Vimort, K. Martin, M. Asselin, F. McGowan, R. Kikinis, G. Fichtinger, and M. Jolley, "Interaction with Volume-Rendered Three-Dimensional Echocardiographic Images in Virtual Reality," Journal of the American Society of Echocardiography, Aug. 2018. [URL]
  17. J. Fishbaugh, L. Pascal, L. Fischer, T. Nguyen, C. Boen, J. Goncalves, G. Gerig, and B. Paniagua, "Estimating shape correspondence for populations of objects with complex topology," in 2018 IEEE 15th International Symposium on Biomedical Imaging (ISBI 2018), 2018. [URL]
  18. H. Greer, S. Gerber, M. Niethammer, R. Kwitt, M. McCormick, D. Chittajallu, N. Siekierski, M. Oetgen, K. Cleary, and S. Aylward, "Scoliosis screening and monitoring using self contained ultrasound and neural networks," in Proceedings of the IEEE International Symposium on Biomedical Imaging, 2018. [URL]
  19. D. Chittajallu, N. Siekierski, S. Lee, S. Gerber, J. Beezley, D. Manthey, D. Gutman, and L. Cooper, "Vectorized persistent homology representations for characterizing glandular architecture in histology images," in Proceedings of the IEEE International Symposium on Biomedical Imaging, 2018. [URL]
  20. D. Chittajallu, M. McCormick, S. Gerber, T. Czernuszewicz, R. Gessner, M. Willis, M. Niethammer, R. Kwitt, and S. Aylward, "Image-based methods for phase estimation, gating and temporal super-resolution of cardiac ultrasound," IEEE Transactions on Biomedical Engineering, pp. 1-1, 2018. [URL]
  21. T. Czernuszewicz, V. Papadopoulou, J. Rojas, R. Rajamahendiran, J. Perdomo, J. Butler, M. Harlacher, G. O’Connell, D. Zukić, S. Aylward, P. Dayton, and R. Gessner, "A new preclinical ultrasound platform for widefield 3D imaging of rodents," Review of Scientific Instruments, vol. 89, no. 7, pp. 075107, 2018. [URL]
  22. T. Nguyen, B. Paniagua, L. Pascal, J. Fishbaugh, C. Boen, J. Goncalves, L. Fischer, and T. Jackson, "A New Method for Quantifying Craniofacial Shape Changes," in 2018 IADR/PER General Session (London, England), 2018. [URL]
  23. F. Gessa, P. Asare, A. Bray, R. Clipp, and M. Poler, "Towards A Test and Validation Framework for Closed-Loop Physiology Management Systems for Critical and Perioperative Care," in Medical Cyber Physical Systems Workshop, 2018.
  24. C. McDaniel, N. Dunlop, R. White, Jr, G. Blakey, T. Nguyen, and B. Paniagua, "High fidelity virtual reality orthognathic surgery simulator," in Proceedings of the Annual Conference of the American College of Oral and Maxillofacial Surgeons, 2018.
  25. V. Arikatla, T. Nguyen, G. Blakey, R. White, Jr, A. Enquobahrie, and B. Paniagua, "Virtual reality osteotomy trainer for orthognathic surgery," in Submitted to 10th National Image-Guided Therapy Workshop, 2018.
  26. A. Hasan, E. Kolahdouz, A. Enquobahrie, T. Caranasos, J. Vavalle, and B. Griffith, "Image-based immersed boundary model of the aortic root," Medical Engineering & Physics, vol. 47, pp. 72-84, Sep. 2017. [URL]
  27. S. Dangi, H. Shah, A. Porras, B. Paniagua, C. Linte, M. Linguraru, and A. Enquobahrie, "Robust head CT image registration pipeline for craniosynostosis skull correction surgery," Healthcare Technology Letters, vol. 4, no. 5, pp. 174-178, Oct. 2017. [URL]
  28. C. Herz, J. Fillion-Robin, M. Onken, J. Riesmeier, A. Lasso, C. Pinter, G. Fichtinger, S. Pieper, D. Clunie, R. Kikinis, and A. Fedorov, "dcmqi : An Open Source Library for Standardized Communication of Quantitative Image Analysis Results Using DICOM," Cancer Research, vol. 77, no. 21, pp. e87-e90, Nov. 2017. [URL]
  29. J. van Griethuysen, A. Fedorov, C. Parmar, A. Hosny, N. Aucoin, V. Narayan, R. Beets-Tan, J. Fillion-Robin, S. Pieper, and H. Aerts, "Computational Radiomics System to Decode the Radiographic Phenotype," Cancer Research, vol. 77, no. 21, pp. e104-e107, Nov. 2017. [URL]
  30. D. Gutman, M. Khalilia, S. Lee, M. Nalisnik, Z. Mullen, J. Beezley, D. Chittajallu, D. Manthey, and L. Cooper, "The Digital Slide Archive: A Software Platform for Management, Integration, and Analysis of Histology for Cancer Research," Cancer Research, vol. 77, no. 21, pp. e75-e78, Nov. 2017. [URL]
  31. D. Qi, K. Panneerselvam, W. Ahn, V. Arikatla, A. Enquobahrie, and S. De, "Virtual interactive suturing for the Fundamentals of Laparoscopic Surgery (FLS)," Journal of Biomedical Informatics, vol. 75, pp. 48-62, Nov. 2017. [URL]
  32. R. Vetreno, R. Yaxley, B. Paniagua, G. Johnson, and F. Crews, "Adult rat cortical thickness changes across age and following adolescent intermittent ethanol treatment," Addiction Biology, vol. 22, no. 3, pp. 712-723, May 2017. [URL]
  33. A. Porras, D. Zukić, A. Enquobahrie, R. Keating, G. Rogers, and M. Linguraru, "Personalized Optimal Planning of Fronto-Orbital Advancement Surgery for the Correction of Metopic Craniosynostosis from CT," in American Cleft Palate-Craniofacial Association's Annual Meeting, 2017.
  34. B. Paniagua, S. Kim, M. Moustapha, M. Styner, H. Cody-Hazlett, R. Gimple-Smith, A. Rumple, J. Piven, J. Gilmore, G. Skolnick, and K. Patel, "Brain structure in sagittal craniosynostosis," in SPIE Medical Imaging, 2017. [URL]
  35. B. Paniagua, L. Pascal, J. Prieto, J. Vimort, L. Gomes, M. Yatabe, A. Ruellas, F. Budin, S. Pieper, M. Styner, E. Benavides, and L. Cevidanes, "Diagnostic index: an open-source tool to classify TMJ OA condyles," in SPIE Medical Imaging, 2017. [URL]
  36. J. Prieto, B. Paniagua, M. Yatabe, A. Ruellas, L. Fattori, L. Muniz, M. Styner, and L. Cevidanes, "Federating heterogeneous datasets to enhance data sharing and experiment reproducibility," in SPIE Medical Imaging, 2017. [URL]
  37. L. Potter, S. Arikatla, A. Bray, J. Webb, and A. Enquobahrie, "Physiology informed virtual surgical planning: a case study with a virtual airway surgical planner and BioGears," in SPIE Medical Imaging, 2017. [URL]
  38. P. Tabrizi, H. Sang, H. Talari, D. Preciado, R. Monfaredi, B. Reilly, S. Arikatla, A. Enquobahrie, and K. Cleary, "Temporal bone dissection simulator for training pediatric otolaryngology surgeons," in SPIE Medical Imaging, 2017. [URL]
  39. C. Ahlbrecht, A. Ruellas, B. Paniagua, J. Schilling, J. McNamara, and L. Cevidanes, "Three-dimensional characterization of root morphology for maxillary incisors," PLOS ONE, vol. 12, no. 6, pp. e0178728, Jun. 2017. [URL]
  40. R. Zhang, D. Zukić, D. Byrd, A. Enquobahrie, A. Alessio, K. Cleary, and P. Kinahan, "A deformable registration workflow for motion correction in PET-CT guided biopsy," in Society of Nuclear Medicine and Molecular Imaging Annual Meeting, 2017.
  41. S. Gerber and M. Maggioni, "Multiscale Strategies for Computing Optimal Transport," Journal of Machine Learning Research, vol. 18, no. 1, pp. 2440-2471, Jan. 2017. [URL]
  42. F. Ebrahim, A. Ruellas, B. Paniagua, E. Benavides, K. Jepsen, L. Wolford, J. Goncalves, and L. Cevidanes, "Accuracy of biomarkers obtained from cone beam computed tomography in assessing the internal trabecular structure of the mandibular condyle," Oral Surgery, Oral Medicine, Oral Pathology and Oral Radiology, vol. 124, no. 6, pp. 588-599, Dec. 2017. [URL]
  43. M. Judson, A. Burette, C. Thaxton, A. Pribisko, M. Shen, A. Rumple, W. Del Cid, B. Paniagua, M. Styner, R. Weinberg, and B. Philpot, "Decreased Axon Caliber Underlies Loss of Fiber Tract Integrity, Disproportional Reductions in White Matter Volume, and Microcephaly in Angelman Syndrome Model Mice," The Journal of Neuroscience, vol. 37, no. 31, pp. 7347-7361, Aug. 2017. [URL]
  44. D. Punzo, J. van der Hulst, J. Roerdink, J. Fillion-Robin, and L. Yu, "SlicerAstro: A 3-D interactive visual analytics tool for HI data," Astronomy and Computing, vol. 19, pp. 45-59, Apr. 2017. [URL]
  45. X. Han, X. Yang, S. Aylward, R. Kwitt, and M. Niethammer, "Efficient registration of pathological images: A joint PCA/image-reconstruction approach," in Proceedings of the IEEE International Symposium on Biomedical Imaging, 2017. [URL]
  46. K. Brady, B. Wu, S. Sim, A. Enquobahrie, R. Ortiz, and S. Arikatla, "Modeling Reduced User Experience Caused by Visual Latency," in Advances in Ergonomics Modeling, Usability & Special Populations. Springer International Publishing, 2017, pp. 267-277. [URL]
  47. S. Sim, B. Wu, K. Brady, A. Enquobahrie, R. Ortiz, and S. Arikatla, "Quantifying the Effects of Reduced Update Rate on Motor Performance and User Experience," in Advances in Ergonomics Modeling, Usability & Special Populations. Springer International Publishing, 2017, pp. 255-265. [URL]
  48. L. Tu, A. Porras, S. Ensel, D. Tsering, B. Paniagua, A. Enquobahrie, A. Oh, R. Keating, G. Rogers, and M. Linguraru, "Intracranial Volume Quantification from 3D Photography," in Computer Assisted and Robotic Endoscopy and Clinical Image-Based Procedures. Springer International Publishing, 2017, pp. 116-123. [URL]
  49. S. Gerber, M. Jallais, H. Greer, M. McCormick, S. Montgomery, B. Freeman, D. Kane, D. Chittajallu, N. Siekierski, and S. Aylward, "Automatic Estimation of the Optic Nerve Sheath Diameter from Ultrasound Images," in Imaging for Patient-Customized Simulations and Systems for Point-of-Care Ultrasound. Springer International Publishing, 2017, pp. 113-120. [URL]
  50. J. Vimort, M. McCormick, and B. Paniagua, "Computing Bone Morphometric Feature Maps from 3-Dimensional Images," Insight Journal, no. January-December 2017, 2017. [URL]
  51. J. Vimort, M. McCormick, F. Budin, and B. Paniagua, "Computing Textural Feature Maps for N-Dimensional images," Insight Journal, 2017. [URL]
  52. F. Ebrahim, A. Ruellas, B. Paniagua, E. Benavides, J. Goncalves, L. Wolford, and L. Cevidanes, "CBCT Biomarkers That Can Accurately Assess Mandibular Condyle Trabecular Structure," in 017 IADR/AADR/CADR General Session (San Francisco, California), 2017. [URL]
  53. M. Yatabe, A. Ruellas, L. Gomes, L. Macron, J. Lopinto, B. Paniagua, F. Budin, and L. Cevidanes, "Comparative Study of Three Methods to Compute 3D Craniofacial Angular Measurements," in 2017 IADR/AADR/CADR General Session (San Francisco, California), 2017. [URL]
  54. J. Fishbaugh, B. Paniagua, V. Boen, L. Cevidanes, and G. Gerig, "Continuous 4D Shape Analysis of Mandibular Changes," in 2017 IADR/AADR/CADR General Session (San Francisco, California), 2017. [URL]
  55. L. Gomes, L. Cevidanes, M. Gomes, A. Ruellas, D. Ryan, B. Paniagua, L. Wolford, and J. Goncalves, "Correlation Between Condylar Displacement and Remodeling Changes Following Orthognathic Surgery," in 2017 IADR/AADR/CADR General Session (San Francisco, California), 2017. [URL]
  56. N. Pentis, S. Pieper, V. Boen, L. Cevidanes, A. Ruellas, M. Yatabe, L. Macron, J. Lopinto, F. Budin, B. Paniagua, M. Styner, and J. Prieto, "Evaluating Dental and Craniofacial Bionetwork for Image Analysis's Dissemination Efforts," in 2017 IADR/AADR/CADR General Session (San Francisco, California), 2017. [URL]
  57. J. Prieto, B. Paniagua, M. Yatabe, A. Ruellas, L. Fattori, L. Muniz, M. Styner, and L. Cevidanes, "Facilitating Experiment Reproducibility Through Data Federation and Image Processing Tools Integration," in 2017 IADR/AADR/CADR General Session (San Francisco, California), 2017. [URL]
  58. L. Cevidanes, E. Benavides, B. Paniagua, A. Ruellas, M. Yatabe, L. Gomes, J. Prieto, C. Huang, H. Zhu, M. Styner, and S. Allareddy, "Integrating Clinical and Imaging Markers of Temporomandibular Joint Arthritis," in 2017 IADR/AADR/CADR General Session (San Francisco, California), 2017. [URL]
  59. A. Ruellas, F. Copello, M. Yatabe, B. Paniagua, J. Maciel, O. Guariza, and L. Cevidanes, "Unilateral Crossbite Malocclusion: Assessment of Asymmetry," in 2017 IADR/AADR/CADR General Session (San Francisco, California), 2017. [URL]
  60. A. Porras, B. Paniagua, A. Enquobahrie, S. Ensel, H. Shah, R. Keating, G. Rogers, and M. Linguraru, "Locally Affine Diffeomorphic Surface Registration for Planning of Metopic Craniosynostosis Surgery," in Medical Image Computing and Computer-Assisted Intervention, 2017. [URL]
  61. P. O'Leary, S. Jhaveri, A. Chaudhary, W. Sherman, K. Martin, A. Vacanti, E. Whiting, J. Money, and S. McKenzie, "Enhancements to VTK enabling scientific visualization in immersive environments," in Proceedings of the IEEE Virtual Reality Conference, 2017. [URL]
  62. S. Birch, M. Lenox, J. Kornegay, B. Paniagua, M. Styner, C. Goodlett, T. Cudd, and S. Washburn, "Maternal choline supplementation in a sheep model of first trimester binge alcohol fails to protect against brain volume reductions in peripubertal lambs," Alcohol, vol. 55, pp. 1-8, Sep. 2016. [URL]
  63. S. Shelton, P. Dayton, S. Aylward, and F. Foster, "The application of acoustic angiography to assess the progression of angiogenesis in a spontaneous mouse model of breast cancer," in 2016 IEEE International Ultrasonics Symposium (IUS), 2016. [URL]
  64. T. Kapur, S. Pieper, A. Fedorov, J. Fillion-Robin, M. Halle, L. O'Donnell, A. Lasso, T. Ungi, C. Pinter, J. Finet, S. Pujol, J. Jagadeesan, J. Tokuda, I. Norton, R. Estepar, D. Gering, H. Aerts, M. Jakab, N. Hata, L. Ibanez, D. Blezek, J. Miller, S. Aylward, W. Grimson, G. Fichtinger, W. Wells, W. Lorensen, W. Schroeder, and R. Kikinis, "Increasing the impact of medical image computing using community-based open-access hackathons: The NA-MIC and 3D Slicer experience," Medical Image Analysis, vol. 33, pp. 176-180, Oct. 2016. [URL]
  65. A. Porras, D. Zukić, A. Equobahrie, G. Rogers, and M. Linguraru, "Personalized Optimal Planning for the Surgical Correction of Metopic Craniosynostosis," in MICCAI Workshop on Clinical Image-based Procedures, 2016.
  66. T. Nguyen, C. Phillips, and B. Paniagua, "The use of SPHARM-PDM and mean latitude axis to evaluate airway changes," The Angle Orthodontist, vol. 86, no. 6, pp. 943-948, Nov. 2016. [URL]
  67. S. Shelton, B. Lindsey, R. Gessner, Y. Lee, S. Aylward, H. Lee, E. Cherin, F. Foster, and P. Dayton, "Acoustic angiography: a new high frequency contrast ultrasound technique for biomedical imaging," in SPIE Commercial + Scientific Sensing and Imaging, 2016. [URL]
  68. D. Zukić, Z. Mullen, D. Byrd, P. Kinahan, and A. Enquobahrie, "A web-based platform for a high throughput calibration of PET scans," in Proceedings of the International Congress and Exhibition on Computer Assisted Radiology and Surgery, 2016. [URL]
  69. R. Vetreno, R. Yaxley, B. Paniagua, and F. Crews, "Diffusion tensor imaging reveals adolescent binge ethanol-induced brain structural integrity alterations in adult rats that correlate with behavioral dysfunction," Addiction Biology, vol. 21, no. 4, pp. 939-953, Jul. 2016. [URL]
  70. I. Oguz, J. Cates, M. Datar, B. Paniagua, T. Fletcher, C. Vachet, M. Styner, and R. Whitaker, "Entropy-based particle correspondence for shape populations," International Journal of Computer Assisted Radiology and Surgery, vol. 11, no. 7, pp. 1221-1232, Jul. 2016. [URL]
  71. L. Gomes, M. Gomes, J. Gonçalves, A. Ruellas, L. Wolford, B. Paniagua, E. Benavides, and L. Cevidanes, "Cone beam computed tomography-based models versus multislice spiral computed tomography-based models for assessing condylar morphology," Oral Surgery, Oral Medicine, Oral Pathology and Oral Radiology, vol. 121, no. 1, pp. 96-105, Jan. 2016. [URL]
  72. F. Oloumi, R. Rangayyan, and A. Ells, "Computer-aided diagnosis of retinopathy in retinal fundus images of preterm infants via quantification of vascular tortuosity," Journal of Medical Imaging, vol. 3, no. 4, pp. 044505, Dec. 2016. [URL]
  73. R. Clipp, A. Bray, R. Metoyer, M. Thames, and J. Webb, "Pharmacokinetic and pharmacodynamic modeling in BioGears," in Proceedings of the International Conference of the IEEE Engineering in Medicine and Biology Society, 2016. [URL]
  74. S. Aylward, M. McCormick, H. Kang, S. Razzaque, R. Kwitt, and M. Niethammer, "Ultrasound spectroscopy," in Proceedings of the IEEE International Symposium on Biomedical Imaging, 2016. [URL]
  75. V. Arikatla, R. Ortiz, S. De, and A. Enquobahrie, "A Unified Framework for Haptic Interaction in Multimodal Virtual Environments," Studies in Health Technology and Informatics, vol. 220, pp. 19-24, 2016.
  76. V. Arikatla, R. Ortiz, T. Halic, S. Radigan, D. Thompson, S. De, and A. Enquobahrie, "An Approach for Automated Scene Management in Real-Time Medical Simulation Framework," Studies in Health Technology and Informatics, vol. 220, pp. 25-28, 2016.
  77. C. Quammen, R. Taylor, P. Krajcevski, S. Mitran, A. Enquobahrie, R. Superfine, B. Davis, S. Davis, and C. Zdanski, "The Virtual Pediatric Airways Workbench," Studies in Health Technology and Informatics, vol. 220, pp. 295-300, 2016.
  78. D. Zukić, M. McCormick, G. Gerig, and P. Yushkevich, "RLEImage: run-length encoded memory compression scheme for an itk::Image," The Insight Journal, 2016. [URL]
  79. D. Zukić, J. Vicory, M. McCormick, L. Wisse, G. Gerig, P. Yushkevich, and S. Aylward, "nD morphological contour interpolation," The Insight Journal, 2016. [URL]
  80. B. Paniagua, A. Ruellas, M. Yatabe, L. Gomes, M. Styner, S. Pizer, and L. Cevidanes, "Computer Assisted subclinical classification of TMJ OA," in 2016 AADR/CADR Annual Meeting (Los Angeles, California), 2016. [URL]
  81. X. Yang, X. Han, E. Park, S. Aylward, R. Kwitt, and M. Niethammer, "Registration of Pathological Images," in Proceedings of the International Workshop on Simulation and Synthesis in Medical Imaging, 2016. [URL]
  82. M. Thames, J. Webb, R. Clipp, J. Carter, Z. Swarm, R. Metoyer, A. Bray, and D. Byrd, "Dynamic response to heat gain and heat loss in the biogears engine," in Proceedings of the Medicine Meets Virtual Reality Conference, 2016.
  83. Z. Swarm, J. Webb, R. Clipp, J. Carter, M. Thames, and R. Metoyer, "Modeling renal behavior and control in biogears," in Proceedings of the Medicine Meets Virtual Reality Conference, 2016.
  84. R. Metoyer, B. Bergeron, R. Clipp, J. Webb, M. Thames, Z. Swarm, J. Carter, Y. Gebremichael, and J. Heneghan, "Multiscale Simulation of Insults and Interventions: The BioGears Showcase Scenarios," in Proceedings of the Medicine Meets Virtual Reality Conference, 2016.
  85. R. Clipp, A. Bray, R. Metoyer, M. Thames, and J. Webb, "Pharmacokinetic and pharmacodynamic modeling in biogears," in Proceedings of the Medicine Meets Virtual Reality Conference, 2016.
  86. R. Clipp, M. Thames, J. Webb, R. Metoyer, Z. Swarm, and J. Carter, "Integration of a baroreflex model into a whole body physiology engine," in Summer Biomechanics, Bioengineering, and Biotransport Conference, 2016.
  87. R. Metoyer, J. Carter, B. Bergeron, A. Baird, A. Bray, R. Clipp, M. Thames, and J. Webb, "A framework for multiscale physiology: towards individualized computer simulation," in Virtual Physiological Human Conference, 2016.
  88. B. Wood, D. Zukić, J. Qi, C. Meyer, R. Ortiz, C. Mendoza, A. Enquobahrie, M. Linguraru, and G. Rogers, "Evaluation of Fronto-Orbital Advancement for Coronal Synostosis using a 3D Statistical Shape Model," in Proceedings of the Congress of International Society of Craniofacial Surgery, 2015.
  89. J. Olasky, G. Sankaranarayanan, N. Seymour, J. Magee, A. Enquobahrie, M. Lin, R. Aggarwal, L. Brunt, S. Schwaitzberg, C. Cao, S. De, and D. Jones, "Identifying Opportunities for Virtual Reality Simulation in Surgical Education: A Review of the Proceedings from the Innovation, Design, and Emerging Alliances in Surgery (IDEAS) Conference: VR Surgery," Surgical Innovation, vol. 22, no. 5, pp. 514-521, Oct. 2015. [URL]
  90. B. Paniagua, D. Zukić, R. Ortiz, S. Aylward, B. Golden, T. Nguyen, and A. Enquobahrie, "Ultrasound-Guided Navigation System for Orthognathic Surgery," in MICCAI Workshop on Augmented Environments for Computer-Assisted Interventions, 2015. [URL]
  91. V. Arikatla and S. De, "An iterative predictor–corrector approach for modeling static and kinetic friction in interactive simulations," Graphical Models, vol. 82, pp. 29-42, Nov. 2015. [URL]
  92. L. Cevidanes, A. Ruellas, J. Jomier, T. Nguyen, S. Pieper, F. Budin, M. Styner, and B. Paniagua, "Incorporating 3-dimensional models in online articles," American Journal of Orthodontics and Dentofacial Orthopedics, vol. 147, no. 5, pp. S195-S204, May 2015. [URL]
  93. Bing Wu, Sung Hun Sim, A. Enquobahrie, and R. Ortiz, "Effects of visual latency on visual-haptic experience of stiffness," in International Workshop on Quality of Multimedia Experience, 2015. [URL]
  94. L. Gomes, M. Gomes, B. Jung, B. Paniagua, A. Ruellas, J. Gonçalves, M. Styner, L. Wolford, and L. Cevidanes, "Diagnostic index of 3D osteoarthritic changes in TMJ condylar morphology," in SPIE Medical Imaging, 2015. [URL]
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  100. D. Zukić, J. Finet, E. Wilson, F. Banovac, G. Esposito, K. Cleary, and A. Enquobahrie, "SlicerPET: A workflow based software module for PET/CT guided needle biopsy," in Proceedings of the International Congress and Exhibition on Computer Assisted Radiology and Surgery, 2015. [URL]
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  114. B. Paniagua, A. Ruellas, M. Yatabe, L. Gomes, M. Styner, S. Pizer, and L. Cevidanes, "Staging of Temporomandibular Joint Osteoarthritis using Statistical Shape Modeling," in Proceedings of Shape Symposium, 2015.
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  117. Y. Gebremichael, R. Clipp, J. Webb, A. Bray, M. Thames, Z. Swarm, J. Carter, and J. Heneghan, "Integration of a spontaneous respiratory driver with blood gas feedback into biogears, an open-source, whole-body physiology model," in Summer Biomechanics, Bioengineering, and Biotransport Conference, 2015.
  118. L. Bompard, S. Xu, M. Styner, B. Paniagua, M. Ahn, Y. Yuan, V. Jewells, W. Gao, D. Shen, H. Zhu, and W. Lin, "Multivariate Longitudinal Shape Analysis of Human Lateral Ventricles during the First Twenty-Four Months of Life," PLoS ONE, vol. 9, no. 9, pp. e108306, Sep. 2014. [URL]
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  141. J. Goncalves, L. Wolford, D. Cassano, G. da Porciuncula, B. Paniagua, and L. Cevidanes, "Temporomandibular Joint Condylar Changes Following Maxillomandibular Advancement and Articular Disc Repositioning," Journal of Oral and Maxillofacial Surgery, vol. 71, no. 10, pp. 1759.e1-1759.e15, Oct. 2013. [URL]
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  166. J. Goncalves, L. Wolford, D. Cassano, G. Porciuncula, B. Paniagua, and L. Cevidanes, "TMJ Condylar Changes Following Maxillomandibular Advancement And Disc Repositioning," in 2013 IADR/AADR/CADR General Session (Seattle, Washington), 2013. [URL]
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  306. A. Enquobahrie, A. Reeves, D. Yankelevitz, and C. Henschke, "Automated detection of pulmonary nodules from whole lung helical CT scans: performance comparison for isolated and attached nodules," in SPIE Medical Imaging, 2004. [URL]
  307. J. Jomier, S. Weeks, and S. Aylward, "Vascular image registration for intra-operative 3D ultrasound annotation," International Congress Series, vol. 1268, pp. 1308, Jun. 2004. [URL]
  308. K. Tucker, K. Robertson, W. Lin, J. Smith, H. An, Y. Chen, S. Aylward, and C. Hall, "Neuroimaging in human immunodeficiency virus infection," Journal of Neuroimmunology, vol. 157, no. 1-2, pp. 153-162, Dec. 2004. [URL]
  309. E. Bullitt, M. Ewend, S. Aylward, W. Lin, G. Gerig, S. Joshi, I. Jung, K. Muller, and J. Smith, "Abnormal Vessel Tortuosity as a Marker of Treatment Response of Malignant Gliomas: Preliminary Report," Technology in Cancer Research & Treatment, vol. 3, no. 6, pp. 577-584, Dec. 2004. [URL]
  310. K. Kocis, M. Cereda, C. Kuroda, H. Hurd, S. Aylward, E. Freid, J. Yankaskas, and W. Sternberger, "AREADI, A NOVEL ULTRASOUND METHOD FOR QUANTIFYING DIAPHRAGM FUNCTION IN ADULTS: 394," Critical Care Medicine, vol. 32, no. 12, 2004. [URL]
  311. J. Jomier, E. Rault, and S. Aylward, "Automatic quantification of pupil dilation under stress," in Proceedings of the IEEE International Symposium on Biomedical Imaging, 2004. [URL]
  312. E. Bullitt, I. Jung, K. Muller, G. Gerig, S. Aylward, S. Joshi, K. Smith, W. Lin, and M. Ewend, "Determining Malignancy of Brain Tumors by Analysis of Vessel Shape," in Proceedings of the Internation Conference on Medical Image Computing and Computer Assisted Intervention, 2004. [URL]
  313. E. Bullitt, G. Gerig, S. Pizer, Weili Lin, and S. Aylward, "Measuring tortuosity of the intracerebral vasculature from MRA images," IEEE Transactions on Medical Imaging, vol. 22, no. 9, pp. 1163-1171, Sep. 2003. [URL]
  314. S. Pizer, G. Gerig, S. Joshi, and S. Aylward, "Multiscale medial shape-based analysis of image objects," Proceedings of the IEEE, vol. 91, no. 10, pp. 1670-1679, Oct. 2003. [URL]
  315. S. Aylward, J. Jomier, S. Weeks, and E. Bullitt, "Registration and Analysis of Vascular Images," Int. J. Comput. Vision, vol. 55, no. 2-3, pp. 123-138, Nov. 2003. [URL]
  316. D. Wallace, J. Jomier, S. Aylward, and M. Landers, "Computer-automated quantification of plus disease in retinopathy of prematurity," Journal of AAPOS: the official publication of the American Association for Pediatric Ophthalmology and Strabismus, vol. 7, no. 2, pp. 126-130, Apr. 2003. [URL]
  317. S. Aylward and E. Bullitt, "Clinical Applications Involving Vascular Image Segmentation and Registration," in Angiography and plaque imaging: advanced segmentation techniques. CRC Press, 2003, pp. 451-499.
  318. D. Wallace, A. Capone, Jr., J. Jomier, S. Aylward, M. Landers, III, and M. Trese, "Computer Automated Quantification of Plus Disease in RetCam Images of Retinopathy of Prematurity," in Proceedings of the Association for Research in Vision and Ophthamology Annual Meeting, 2003.
  319. B. Jolly, M. Van Horn, S. Aylward, and E. Bullitt, "Needle Detection and Tracking in the TIPS Endovascular Procedure," in Proceedings of the Internation Conference on Medical Image Computing and Computer Assisted Intervention, 2003. [URL]
  320. J. Jomier, D. Wallace, and S. Aylward, "Quantification of Retinopathy of Prematurity via Vessel Segmentation," in Proceedings of the Internation Conference on Medical Image Computing and Computer Assisted Intervention, 2003. [URL]
  321. Y. Fridman, S. Pizer, S. Aylward, and E. Bullitt, "Segmenting 3D Branching Tubular Structures Using Cores," in Proceedings of the Internation Conference on Medical Image Computing and Computer Assisted Intervention, 2003. [URL]
  322. D. Cool, D. Chillet, J. Kim, J. Guyon, M. Foskey, and S. Aylward, "Tissue-Based Affine Registration of Brain Images to form a Vascular Density Atlas," in Proceedings of the Internation Conference on Medical Image Computing and Computer Assisted Intervention, 2003. [URL]
  323. J. Guyon, M. Foskey, J. Kim, Z. Firat, B. Davis, K. Haneke, and S. Aylward, "VETOT, Volume Estimation and Tracking Over Time: Framework and Validation," in Proceedings of the Internation Conference on Medical Image Computing and Computer Assisted Intervention, 2003. [URL]
  324. D. Chillet, J. Jomier, D. Cool, and S. Aylward, "Vascular Atlas Formation Using a Vessel-to-Image Affine Registration Method," in Proceedings of the Internation Conference on Medical Image Computing and Computer Assisted Intervention, 2003. [URL]
  325. E. Bullitt, G. Gerig, S. Aylward, S. Joshi, K. Smith, M. Ewend, and W. Lin, "Vascular Attributes and Malignant Brain Tumors," in Proceedings of the Internation Conference on Medical Image Computing and Computer Assisted Intervention, 2003. [URL]
  326. E. Pisano, E. Cole, E. Kistner, K. Muller, B. Hemminger, M. Brown, R. Johnston, C. Kuzmiak, M. Braeuning, R. Freimanis, M. Soo, J. Baker, and R. Walsh, "Interpretation of Digital Mammograms: Comparison of Speed and Accuracy of Soft-Copy versus Printed-Film Display," Radiology, vol. 223, no. 2, pp. 483-488, May 2002. [URL]
  327. S. Aylward and E. Bullitt, "Initialization, noise, singularities, and scale in height ridge traversal for tubular object centerline extraction," IEEE Transactions on Medical Imaging, vol. 21, no. 2, pp. 61-75, Feb. 2002. [URL]
  328. E. Bullitt and S. Aylward, "Patient-specific vascular models for endovascular and open operative procedures," International Congress Series, vol. 1247, pp. 129-138, Dec. 2002. [URL]
  329. E. Bullitt and S. Aylward, "Volume rendering of segmented image objects," IEEE Transactions on Medical Imaging, vol. 21, no. 8, pp. 998-1002, Aug. 2002. [URL]
  330. S. Aylward, "Continuous mixture modeling via goodness-of-fit ridges," Pattern Recognition, vol. 35, pp. 1821-1833, 2002.
  331. S. Aylward, J. Jomier, J. Guyon, and S. Weeks, "Intra-operative 3D ultrasound augmentation," in Proceedings of the IEEE International Symposium on Biomedical Imaging, 2002. [URL]
  332. L. Ibanez, L. Ng, J. Gee, and S. Aylward, "Registration patterns: the generic framework for image registration of the insight toolkit," in Proceedings of the IEEE International Symposium on Biomedical Imaging, 2002. [URL]
  333. Y. S, A. J, L. E, S. Will, C. Vikram, A. Stephen, M. Dimitris, and W. Ross, "Engineering and Algorithm Design for an Image Processing API: A Technical Report on ITK - the Insight Toolkit," in Proceedings of the Medicine Meets Virtual Reality Conference, 2002. [URL]
  334. E. Bullitt, S. Aylward, E. Bernard, and G. Gerig, "Computer-assisted visualization of arteriovenous malformations on the home personal computer," Neurosurgery, vol. 48, no. 3, pp. 576-582; discussion 582-583, Mar. 2001.
  335. E. Bullitt, S. Aylward, K. Smith, S. Mukherji, M. Jiroutek, and K. Muller, "Symbolic description of intracerebral vessels segmented from magnetic resonance angiograms and evaluation by comparison with X-ray angiograms," Medical Image Analysis, vol. 5, no. 2, pp. 157-169, Jun. 2001.
  336. E. Bullitt and S. Aylward, "Analysis of time-varying images using 3D vascular models," in Proceedings 30th Applied Imagery Pattern Recognition Workshop (AIPR 2001). Analysis and Understanding of Time Varying Imagery, 2001. [URL]
  337. S. Aylward, S. Weeks, and E. Bullitt, "Analysis of the Parameter Space of a Metric for Registering 3D Vascular Images," in Proceedings of the Internation Conference on Medical Image Computing and Computer Assisted Intervention, 2001. [URL]
  338. M. Rosenthal, S. Weeks, S. Aylward, E. Bullitt, and H. Fuchs, "Intraoperative Tracking of Anatomical Structures Using Fluoroscopy and a Vascular Balloon Catheter," in Proceedings of the Internation Conference on Medical Image Computing and Computer Assisted Intervention, 2001. [URL]
  339. E. Bullitt and S. Aylward, "Volume Rendering of Segmented Tubular Objects," in Proceedings of the Internation Conference on Medical Image Computing and Computer Assisted Intervention, 2001. [URL]
  340. E. Pisano, E. Cole, B. Hemminger, M. Yaffe, S. Aylward, A. Maidment, R. Johnston, M. Williams, L. Niklason, E. Conant, L. Fajardo, D. Kopans, M. Brown, and S. Pizer, "Image Processing Algorithms for Digital Mammography: A Pictorial Essay," RadioGraphics, vol. 20, no. 5, pp. 1479-1491, Sep. 2000. [URL]
  341. E. Pisano, E. Cole, S. Major, S. Zong, B. Hemminger, K. Muller, R. Johnston, R. Walsh, E. Conant, L. Fajardo, S. Feig, R. Nishikawa, M. Yaffe, M. Williams, and S. Aylward, "Radiologists’ Preferences for Digital Mammographic Display," Radiology, vol. 216, no. 3, pp. 820-830, Sep. 2000. [URL]
  342. R. Gerstle, S. Aylward, S. Kromhout-Schiro, and S. Mukherji, "The role of neural networks in improving the accuracy of MR spectroscopy for the diagnosis of head and neck squamous cell carcinoma," American journal of neuroradiology, vol. 21, no. 6, pp. 1133-1138, 2000.
  343. E. Bullitt, A. Liu, S. Aylward, C. Coffey, J. Stone, S. Mukherji, K. Muller, and S. Pizer, "Registration of 3D cerebral vessels with 2D digital angiograms: Clinical evaluation," Academic Radiology, vol. 6, no. 9, pp. 539-546, Sep. 1999. [URL]
  344. B. Hemminger, E. Cole, S. Zong, M. Yaffe, S. Aylward, A. Maidment, M. Williams, L. Niklason, R. Johnston, and E. Pisano, "Evaluation of digital processing methods for the display of digital mammography," in SPIE Medical Imaging, 1999. [URL]
  345. E. Bullitt, S. Aylward, A. Liu, J. Stone, S. Mukherji, C. Coffey, G. Gerig, and S. Pizer, "3D Graph Description of the Intracerebral Vasculature from Segmented MRA and Tests of Accuracy by Comparison with X-ray Angiograms," in Proceedings of the International Conference on Information Processing in Medical Imaging, 1999. [URL]
  346. S. Aylward, B. Hemminger, and E. Pisano, "Mixture Modeling for Digital Mammogram Display and Analysis," in Digital Mammography. Springer Netherlands, 1998, pp. 305-312. [URL]
  347. E. Bullitt, A. Liu, S. Aylward, M. Soltys, J. Rosenman, and S. Pizer, "Methods for displaying intracerebral vascular anatomy," American journal of neuroradiology, vol. 18, no. 3, pp. 417-420, Mar. 1997.
  348. E. Bullitt, A. Liu, S. Aylward, and S. Pizer, "3D reconstruction of aneurysms from projection angiograms," British Journal of Neurosurgery, vol. 11, no. 5, pp. 458-459, Jan. 1997.
  349. S. Aylward, "Continuous mixture modeling via goodness-of-fit cores," Ph.D. dissertation, University of North Carolina at Chapel Hill, 1997.
  350. S. Aylward and S. Pizer, "Continuous Gaussian mixture modeling," in Proceedings of the International Conference on Information Processing in Medical Imaging, 1997. [URL]
  351. E. Bullitt, A. Liu, S. Aylward, and S. Pizer, "Reconstruction of the intracerebral vasculature from MRA and a pair of projection views," in Proceedings of the International Conference on Information Processing in Medical Imaging, 1997. [URL]
  352. S. Aylward, E. Bullitt, S. Pizer, and D. Eberly, "Intensity ridge and widths for tubular object segmentation and description," in Proceedings of the Workshop on Mathematical Methods in Biomedical Image Analysis, 1996. [URL]
  353. G. Peterson, D. St. Clair, S. Aylward, and W. Bond, "Using Taguchi's method of experimental design to control errors in layered perceptrons," IEEE Transactions on Neural Networks, vol. 6, no. 4, pp. 949-961, Jul. 1995. [URL]
  354. S. Aylward, J. Coggins, T. Cizadlo, and N. Andreasen, "Spatially invariant classification of tissues in MR images," in Visualization in Biomedical Computing 1994, 1994. [URL]
  355. D. St. Clair, G. Peterson, S. Aylward, and W. Bond, "Design techniques for the control of errors in backpropagation neural networks," in Optical Engineering and Photonics in Aerospace Sensing, 1993. [URL]
  356. R. Anderson and S. Aylward, "Lab testing of neural networks for improved aircraft onboard-diagnostics on flight-ready hardware," in Annual Reliability and Maintainability Symposium 1993 Proceedings, 1993. [URL]
  357. D. St. Clair, W. Bond, A. Rigler, and S. Aylward, "An evaluation of learning performance in backpropagation neural networks and decision-tree classifier systems," in Proceedings of the 1992 ACM/SIGAPP symposium on Applied computing technological challenges of the 1990's - SAC '92, 1992. [URL]
  358. W. Bond, D. St. Clair, M. Amirfathi, C. Merz, and S. Aylward, "Neural network analysis of nondestructive evaluation patterns," in Proceedings of the 1992 ACM/SIGAPP symposium on Applied computing technological challenges of the 1990's - SAC '92, 1992. [URL]
  359. S. Aylward and R. Anderson, "An algorithm for neural network architecture generation," in 8th Computing in Aerospace Conference, 1991. [URL]